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54-3610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19623026 [Map]; Strand: c
      • AT2G47940.1 - [+] show detail - DEGP protease 2
        Distance: -794; Region: promoter
      • AT2G47940.2 - [+] show detail - DEGP protease 2
        Distance: -775; Region: promoter
    Flanking Genome Sequence: 54-3610-1 - 5-prime edge 
    AAAATATCAT CCATATCTAT AGCAGTTAGA CTAACTAGTG TTGCATATTT 
    ATATAATTCT GCTGCAAAGA AAAAAAGAAC CACGTAAGTA AATAAATGGT 
    CATGTAATTT TGGTGCTAGG GAGACAAAAT ACNGGAAATG GCGGTCGCTT 
    TCGTTTAGAA ATAAAGGGAA TATGGATGGG GCAACGCGTG GATTAAACCA 
    GAAACCTTTG ATTTTATTTG TTGACTTTGG GGATGCCGCC TACTTCTTTA 
    ATCAAAGTTA ATGATTAATT AAATTTGATA TTTATCTTTT GTCACACAAG 
    CAATTAACCA GTTTACTTAT CTCGTTACGC AATTAAACAT GATCATTCAA 
    AATGAAGCAC CTAACGAGTA GACCCACATG AACAAGTTGC CTAGGTTATA 
    TTTTTAAGAA AAGTAGTCAT ACAGTAGTAT AATTTTACAT TAAATCATGC 
    TTTGATTAAA AGAATTAAAT AACGGGATAT AATCATTTAT CCAAAGAAAC 
    ACAAAGAGAG AGAGATATAA GTAATCATTA AGGTTTTTGG AACGAGAACG 
    ATCATAAGTG CAGATACAAA AAGGATTACT TATCAGTTAT CATACCTAAT 
    TTGTTTATAC GTGAAAAAGA TTTCTAAAAT GTATATTCAA CCTTGTCTAA 
    AAATATTTGA AAGTAATAGA TAATATTGTT GAACTGTAGT TTATAAGAAA 
    GCCATATACG TATGTTTGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17043398 [Map]; Strand: c
      • AT5G42591.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 6618; Region: intergenic
      • AT5G42600.1 - [+] show detail - marneral synthase
        Distance: -10119; Region: intergenic
    Flanking Genome Sequence: 54-3610-1 - 3-prime edge 
    GATATTTTAG ATATCTATGT ATACATTTTT GCAGTCACTT TGTAAAATAA 
    ATTTTGGAGT TGAAATTTAT TTACAGTGGC TGCCACTGAC ATTTAATAAT 
    TGTTTTTGAT AATTAGAAAG AAAATCTTTG AATTAAATAT TTGACAATCT 
    TCCCAAAATC TTTCCACATT AATTACACGA TTAGTTACTA AAAAAAACTT 
    ACAAAATATT TAATATCATT TAATTACTAT AAAATTATCA TTTTTGATAT 
    TGTTTTTTTA CATGACTATA ATAATTCGAT TATAATCATT AAACCGCAAA 
    GATATTTGAT AGCATTTAAT TACTACAAAA TTAAAAAATA TTTAGACAAT 
    GATTCATAAA CATATCATAA ATAAAATCAG TGAGTTTTTT TTACGGGACG 
    GATTGGCGGG ACGGGTTTGA CAGGACGTTA CTTAATAACA ATCGTAAACT 
    ATAAAATAAA AATATTTTAT AGATAAATAT AATTTGCAAA CTTTTATATA 
    TAGTAACTTT AAAAAATAAA TTGTCTCCGC GGTATACCGC GGGTTAAAAT 
    CTAGTAAGAC CTAATAGAGT ACCAAGGATA GAACAATTAA TACGAGTATC 
    GCGTATGAAA AATAATATAC ATGTATTCTG ATAACTATAT AAAGGTAGTA 
    GATGAAATGA TTTTGATTCA TGAATCTCTA TGGTTGAGTG AGAAAATGAA 
    TAGCCTGAGA CACCCCAGGT GTAATAGCTT CACGCTGGGC CTG

AT2G47940.1

Model type
Protein coding
Short Description
DEGP protease 2
Curator Summary
Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description
DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47940.2

Model type
Protein coding
Short Description
DEGP protease 2
Curator Summary
Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description
DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42591.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42600.1

Model type
Protein coding
Short Description
marneral synthase
Curator Summary
Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.
Computational Description
marneral synthase (MRN1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases family protein (TAIR:AT1G78500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR