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54-3628-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 59127 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-3628-1 - 5-prime edge
    AATATACCTC ACCACACCAC ATCACAACAA CGAAGAAGAA GAAGAAGAAG 
    AAGAGCTTCA AGAAGACAAA TACACTATTT TTTATCGTCT GCAATGCCCT
    TACCCTTTGA AGAGTTTCAA GGGAAGGGGA TTTCTTGTTT CTCTTCTTTC
    TCGTCTTCCT TCCCCCAACC ACCGTCGTCT CCGCTTTTGA GCCACCGCAA
    AGCAAGAGGC GGCGAAGAAG AAGAGGAAGA AGTTCCCGCG GCGGAGCCTA
    CCTCTGTTCT GGACTCCCTC ATAAGCCCAA CCTCTTCCTC CACGGTGTCT
    TCCTCTCACG GCGGAAACAG CGCCGTCGGA GGCGGCGGCG ACGCCACCAC
    CGATGAGCAA TGCGGAGCCA TTGGGTTGGG TGATTGGGAG GAGCAAGTTC
    CTCATGACCA CGAACAGAGC ATTCTCGGAC TCATCATGGG AGATTCCACA
    GATCCCTCTC TTGAACTCAA CAGCATTCTC CAAACATCTC CCACCTTCCA
    CGACTCTGAC TACTCATCAC CCGGTTTCGG AGTCGTCGAC ACCGGCTTCG
    GTTTAGACCA CCACTCTGTT CCGCCGTCAC ATGTTTCCGG TCTTCTGATC
    AACCAAAGTC AAACCCACTA CACACAGAAT CCTGCGGCTA TCTTCTACGG
    CCACCACCAC CATACACCTN CGNCGGCAAA GCGGCTCAAC CCTGGTCCCG
    TGGGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40536 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -347; Region: promoter
    Flanking Genome Sequence: 54-3628-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAAATT 
    GCACGTGACG ATCTTGGGCA GCACCTAAAC ATGTATTTGT GTGCGTAATT
    TTGTAATAAG TAAGTGCATC GAGTTTGATG AATCAGTATT TGAATGATAA
    TTCGATGACA GTACATTTGT TGCCATAAGA ACCCTAAAGT AAGATCCATA
    AGGATGATGA AAGCT

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR