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54-3636-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23345188 [Map]; Strand: w
      • AT3G63190.1 - [+] show detail - ribosome recycling factor, chloroplast precursor
        Distance: -415; Region: promoter
      • AT3G63200.1 - [+] show detail - PATATIN-like protein 9
        Distance: -714; Region: promoter
    Flanking Genome Sequence: 54-3636-1 - 5-prime edge 
    ATTNATGATG GATAGGAGAT ATATNAAGAA GAGNNAATTA NCATTANNTA 
    AGACCGATNC TAGTNGATTA ACTNAGANGA GGCNACAATG NGATCANCCG 
    GGAGCCGAGC CGGTAAGGCA GCCGAGGTTC GCGCTTACTC CTTGACCTTC 
    ATACTGACAT GCCTACTCAC ACGTGCGAGA ACAGTCCTAC CACCCCATCA 
    ATGTTTTTTT GTTTAGTAAA ATTCTGATTA TACTTTGATT TTTTTTCCTG 
    TCAAGTATAC TTTGATTTAT GTTCTTTTAA TTCGTGAATT ACTTATATTT 
    ATGTGTCTAG CAATAGTTTA AGGCTTTTAA AAATAGATTA ATTATACATG 
    TATAATATAC AAGTTTGGGA AAAAAAATAA GAAAACTATC TCGTGTCGCA 
    TTTTTTGTTT AGTANAACAT ATAATTTTTT TTATCAAGCA ACAAATATTA 
    GCTGCCCAAA CAAAAGAAAA AAATATGTCA AAAAAAAAGG ATTNTTCNCA 
    TCGGCTAATT AAAAAATAAA AATNGACTTG ACGANATTTA GTTATTTGNG 
    AAATAATAAT TTGTTACCAA AAATTATAGT ATGCCCTTTT TCAATTNGGG 
    TTAATTATAT TNGNAATTTT CTTCANANAA ATTACNCCTT TTAAAAGAAG 
    AAGAAAAAAC AANTCCTANT TTCATTGNAA AATNTGTAAA CGATGGGAAA 
    TAAATAGAAA AAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23345066 [Map]; Strand: w
      • AT3G63190.1 - [+] show detail - ribosome recycling factor, chloroplast precursor
        Distance: -293; Region: promoter
      • AT3G63200.1 - [+] show detail - PATATIN-like protein 9
        Distance: -836; Region: promoter
    Flanking Genome Sequence: 54-3636-1 - 3-prime edge 
    ATGAAGGACG TGGAATCGAC GACGAACCGG CAAAAGTATA TAAATAGTTT 
    ATGAATGATG ATATCAATGC ACCATTTCAT TTAATATATA TTTTTGAATA 
    CCCTTTGACA ATTTACCCTT TGATTTGGAC CATGACATAA ATATGTTAGA 
    ATTTAAACCT TTTAGTTTTA CTTTTCTTCT GGTACAAATC AGACCATTGA 
    TCACCGTACC TTCTTCGACC CAATACAAAT TTTGTTGGCT CAAACCCATT 
    TCAATATGGG CTACCATGTA AATAGCAAAT GGGATATTAC GGCCCATTAA 
    GGCCCACAGA AAAGATATAT CTGAAGGGAT TATAGTTAGC TGTCCATCCA 
    AACAGAGCAA GCT

AT3G63190.1

Model type
Protein coding
Short Description
ribosome recycling factor, chloroplast precursor
Curator Summary
The gene encodes a chloroplast ribosome recycling factor homologue. Analysis of mutants revealed its role in the chloroplast development and eary stages of embryo development.
Computational Description
"ribosome recycling factor, chloroplast precursor" (RRF); FUNCTIONS IN: copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: Ribosome recycling factor (TAIR:AT3G01800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63200.1

Model type
Protein coding
Short Description
PATATIN-like protein 9
Computational Description
PATATIN-like protein 9 (PLP9); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR