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54-3658-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 211641 [Map]; Strand: c
      • AT5G01540.1 - [+] show detail - lectin receptor kinase a4.1
        Distance: 0; Region: exon1 (CDS)
      • AT5G01542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3658-1 - 5-prime edge
    TTTCCCGCAA CGGAAACCCC TCATCTGCGT CTGATGTTTT CGCGTTTGGC 
    GTTTTGTTGT TAGAGATCGT TTGCGGGAGA AAACCAACGG ATTCCGGTAC
    CTTCTTCTTG GTCGATTGGG TTATGGAGCT TCACGCGAAC GGTGAGATTC
    TCAGTGCGAT TGATCCGAGA CTAGGATCTG GTTACGACGG AGGAGAAGCA
    AGGCTTGCTC TCGCCGTCGG ATTGCTCTGT TGCCACCAAA AACCGGCGTC
    TCGGCCGTCG ATGAGAATCG TGCTTAGGTA TCTAAACGGA GAGGAGAATG
    TACCTGAGAT TGACGATGAG TGGGGATATT CAAAGTCTTC AAGAAGCGAA
    TT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 211757 [Map]; Strand: c
      • AT5G01540.1 - [+] show detail - lectin receptor kinase a4.1
        Distance: 0; Region: exon1 (CDS)
      • AT5G01542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3658-1 - 3-prime edge
    GCGGGAAAGC TCTGGCGCCA TGTACCCGAT GGTTCCAACG AGTGCTGTTG 
    TTTCCGATAG CGTTCCGCGT TCGTAAAGCC TCGCGAGTCC AAAATCTCCC
    AATCTAGGGT TCATCTTTGA ATCAATCAAG ACATTGCTAG GTTTCACGTC
    TCTATGAATC ACAATCTTCT CCCATTCTTC GTGAAGATAC AATAAACCAG
    ACGCGATTCC TTTAGCGATC TGAAAACGAG CGTTCCACGA CAAAACGGCG
    CCGCTTCTTC TCGGTACAGT GTAGAGCAGA GAGTCTAAGC TNCCATCCCG
    GGCCNTNGAC CANGCATGCC CCTATNGAAG ACTCATTNAT ACNNTGGCTA
    CACTATGAAN GCNACCNGNC CGGGCCGCNG ACCACGCATN NNNCTNTACT
    CATNCACATG ACATTTGNTN GTATGNCGAC TGGNAACNCN NNNTNNNGAN
    TTTNNTGCTT CTNTNAGNTC TCNNCNCNGN CCGANGACCG CGCGTNNNNN
    GNT

AT5G01540.1

Model type
Protein coding
Short Description
lectin receptor kinase a4.1
Curator Summary
Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.
Computational Description
lectin receptor kinase a4.1 (LECRKA4.1); FUNCTIONS IN: kinase activity; INVOLVED IN: N-terminal protein myristoylation, abscisic acid mediated signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01540
Link
InterPro Scan - TAIR