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54-3659-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18000994 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6260; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 318; Region: intergenic
    Flanking Genome Sequence: 54-3659-1 - 5-prime edge
    GATGAAATAG GGTAATTCAA AATCTAGCTT GATATGCCTT TTGGTTCATT 
    TTAACCTTCT GTAAACATTT TTTCAGATTT TGAACAAGTA AATCCAAAAA
    AAAAAAAAAA AAANNCCCCC CCCCCCCCAA ANTTTTTTAA GGGNNAAAAA
    NNNCCNAAAA NNTTGGGGTT AAAAAAAAAA ANCCAAAANC NNNNAAANCC
    NTNNGAAANN GNNNNNNNAA AAANNCCCCG NNGGGGGGTT TNNNANAANT
    TTTNNGGTTN GGGGNNCCCC NGNCCCNAAA GGGGAANCCC AAACCCC
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001110 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6376; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 202; Region: intergenic
    Flanking Genome Sequence: 54-3659-1 - 3-prime edge
    ATTNCATCGT ATACACAAAA CTGATAATGT GGACACAGTT GATTTTACTT 
    CTCGATGACA TCGTAGTTTT ATTTAATTTG GAAACCACGG CCCATATGAG
    CACATTTCAA TTAAAAACCA ATGGTAAGAG CATTTTCCAT GCAAGATTCG
    AGAGATATTA ACCCAGTGAC TGTTAAAACA GCTTAGAACC CTAATAACGA
    ATTTCAATTA CTCAATTTAC CATTCGCATT TCGCAATAAC CAAACTGAGC
    CAGTCACAAG GAGTAAACCG AACCGGATTA TTTATTTATA AAATGAAAGA
    AAGGAAACCA AACAACAACA GCAGTAGTAG TCTGACGTAA ACCAAAAAGC
    AGGCAGATCA ACAACTAAAA GAAACTCAAA TTACCAAAAC AAACAGGAAA
    TTGCAAACTA AGTTTTTTTA CCATATGCAT ACAAAGACCA TAAAAGGTTC
    TGATAATCAC CGGTTTCATC TCTCAGTATT TAATCCGGCC ATCTCCTTCC
    GTTATGACAT CGTTGAAAGT GCCACCACTC GGGATCATCG GCAACACATG
    TTCTTGGTGC GGACAAATCA CATCCAACAG GTAAGGTCCT GGTGTATCCA
    GCATTGTCTG AATAGCTTCT CGGAGATCTG CTTTCTTTTG TCNCCCCTNG
    GCCGGGTGGA AANCCCNNNN AGGNGNNNGT NGNNNAAAAA NAAAAAAAAA

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR