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54-3663-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10332490 [Map]; Strand: c
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 5; Position: 10376995 [Map]; Strand: w
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3663-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCC 
    TGTAAGTTTC AACATTAGGT CTCACCATCT TCATCTTCAT TTCCTCTTTC 
    AGAGAGAGCG CTTGCCCGAA ATTCCCCAGC TTAGAAAATG CGTTTATGAG 
    AATGTTGTAT ATTACAGTGT TCGGATTGAC CTTTGAGTGC AAACCCATGT 
    CCTTAAAGAG CTTCAATGCT TCGTCTAATT CGCCGACTGA GCAATAAGCG 
    TCAATCACCG CTCCATATGT CGTGACAGTC GGGTCTAACC CATCTTCTCT 
    CATCTGCTCC ATCATTCTCT CAACACTCTC GAAGTCCTTG TGTTTACCGA 
    AAAACGAAAT CAGAGTGTTG TAAGTGATGG AATCAGGTTT CTTCCCTTCT 
    TTTTCCATAT CGGTTAGCAT CTCATAGACT TTCTCTGCAT TATTCTTATC 
    ACAAAACAAC CCAATAAGCA TGTTGTAAGC CAATAAGTCA AGAGAAAACC 
    CTCCTTCTTT CAGTTTCTCC ACCACTCTAA TGGCGTCATG ATCCCGTCTA 
    ACTTGGCACA ATCCAGAGAT CAAAGCATAA TAGATCTTTG CATCAGGAGA 
    ACAACCAGCT TCCAACATTT TTTCATACCA ATACATAGCC TTCTCTACAT 
    TACTGACGCT GCAACAAGCA TGAATCAATG TCATATAAGT AACCACATTC 
    CCTTTCACGC CTTCCTTTTN CATATCCATA AAGAAAACAA CCGNCATGTT 
    CATCCATGG

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR