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54-3700-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17209444 [Map]; Strand: c
      • AT1G46120.1 - [+] show detail - transposable element gene
        Distance: 2022; Region: intergenic
      • AT1G46192.1 - [+] show detail - transposable element gene
        Distance: -3126; Region: intergenic
    Flanking Genome Sequence: 54-3700-1 - 5-prime edge 
    CTTTANNNAC TACCAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATGAG TTATATAGCA CTCTAAACCA TTAAGGACTC 
    GTAAAATTAA TCACATGTTA GGTCTGAATG TATTATAATT CTTCGAACTG 
    AGTAGTCTTT TTTTTTTTTG GNAAGGGGNT TTGGGNANTT TNNNTTTNTT 
    TTTTCNAAAA AAAANANNAA ANTTNTTTTT ANNAAAACCC TTTTTTTTTN 
    GNNGNNCTTT NGNNGGGNNG NNNNGGGGAA ACCTCCCTTN NAANNATNNC 
    NACCCTTTTC CCNTTAAAGN NAACCNTTTT AACCCNNCCT TNANNGNTNC 
    CNAATTTNGG GNNCNGGGTT NAAANNGGGG NAGNNGNCNA AAANCNTTTA 
    AAACCNAAAA AANNNCCGCN AATNCTNAAA AAGGGCCNNN CAAANTTNAA 
    GGNCTTNNNT TNGNTTTNGG AAAAANTNCC NNCCCGGGCC GGGANCCCCC 
    CGGGNCCATT AAANCNGACN NNNNNNCNNN CCNTNGNNNT NNCNNNCCNN 
    NGAGACTNNG NGNNNCTNNN GANNNNNGNN NCTGCNTNGT NNNNGNGGNC 
    TNCTCTGNNC CTNNNNNNNN GANCNNNNGC NTNNNNCNNT NNCTNNGNGG 
    NNNNNNNNNG NGNNNGGGGN NNNGNNNNNN CCNCNCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17209447 [Map]; Strand: c
      • AT1G46120.1 - [+] show detail - transposable element gene
        Distance: 2025; Region: intergenic
      • AT1G46192.1 - [+] show detail - transposable element gene
        Distance: -3123; Region: intergenic
    Flanking Genome Sequence: 54-3700-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    AGTATAGATA ACTCTACAAA GTCTACTTAT ATTAGTGCAT GTGCATGTCT 
    TTCTAATGTA TTGTATGTTG AAATTAACTT CAGTAAAATG AATATAATCT 
    GGAATCTGGA TATTCTTTTG CTCTTTTCAT ATTGTGGACA TATCTTTTGA 
    AAATCTATTG GATTTGTATA GACACGAATC CTTATTTGTC ACGATTTTCA 
    AATCAAAGAT GCTTTAGATT AAAGTACTCT TTTAACCACG GTATTTCCTC 
    TTAAACTTTT TAATTAAGCA CTAAAAAAGT GTGCTTGCTT TGTCTTTCAT 
    GGAAATTTTC AAATGGATAT CCAATATGCT TTTTATACAG TTTACTAATA 
    CATGAAACTG AAAAAAAAAA AAAAAAANTT NNNCCNNNNN CNNCCCCCAA 
    AAANTTTTTA AAANCNNCCC CNNCNNANTT NACCCCNTTT CCCCNTTNAA 
    AAAAAANNTT NTNAAAAAAA AAAAAAANAN NNNTNGGTTN CCAAAANTTA 
    TTNAAAAATT TTTTTTGGGN TTTNCCCTTT TNNANNAATT TNCCCCCCCC 
    NNAANNNTAT TTNCCCTANN CCAAANNNCC NNANAAAAAA AANAANTGGG 
    GNNGNAAGGA ANCCCCAAAA TAAAANAAAC TTTTTTNTTT NGCNTTNAAA 
    NNTTTTTTTA ACAATTTNAA ACTTTGNAAA GGGGNNTTTT TNTTTTNTTN 
    CCCTTTTTTA AANAAANAAA TTTTTTTTT

AT1G46120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-32 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G46192.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 7.4e-69 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR