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54-3716-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26458890 [Map]; Strand: c
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron1 (CDS)
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron2 (CDS)
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron1 (CDS)
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-3716-1 - 5-prime edge 
    CCCGCTTTCC AGTCGGGAAA CCTGTCGTGC CAGCTGCATT AATGAATCGG 
    CCAACGCGCG GGGAGAGGCG GTTTGCGTAT TGGAGACCTC AATTGCGAGC 
    TTTCTAATTT CAAACTATTC GGGCCTAACT TTTGGTGTGA TGATGCTGAC 
    TGTCAAGCGT GAGGTTCAGA TTCTTATTGC TCTCTCTGGC CACGAGAATG 
    TTGTTCAGTT TCACAATAAC TTACGTCATT TCTTATAGTC TATCCTTCAT 
    GTATCGGTGG CATTCACATT TTACTCTTGC CTTTCTTCTA GGTTGTGCGA 
    AGGAGGCGAA TTGCTGGATA GGATATTATC CAAGTTAGTC AGCATCTCTC 
    ACTACTCTTT AATCTATTAC CGGTGGAATC GTAAGAAAGA ACCTACCTTC 
    TCATTATTGA TGCTTTCCTT TTTTTATTTT TCAGGAAAGG TAATCGGTAC 
    TCCGAGAAAG ATGCAGCCGT TGTCGTTAGG CAGATGCTCA AAGTTGCAGG 
    AGAATGTCAT CTACACGGTC TTGTACATAG AGATATGAAA CCAGAGGTAC 
    ATTCTCTTGC TTATACCTCT TANGATGTGC TTTTTGTTTC TAATAATAAA 
    TCTTCTGCTT TTGCTCCTCC TCCAATTTCT TGCAGAACTT TTTGTTCAAA 
    TCAGCTCAAC TAGATTCGCC TCTAAAGGCT ACGGATTTTG GNTTATCGGA 
    TTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18000141 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 5407; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 1171; Region: intergenic
    Flanking Genome Sequence: 54-3716-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CAGTGAGCGC AACGCAATTA ATGTGAGTTA GCTCACTCAT TAGGCACCCC 
    AGGCTTTACA CTTTATGCTT CCGGCTCGTA TGTTGTGTGG AATTGTGAGC 
    GGATAACAAT TTCACACAGG AAACAGCTAT GACATGATTA CAGAATTCGA 
    GCTCGGTACC CGGGGATCCT CTAGATATTG TTTTTGTTTC ACATAAATGT 
    CGTTTTGGAT TATTCATGTA ATATTTTAAA CTAAAGTACA ATTTTTGACT 
    ACTTTANTTT ACTAACTTAA GCTTTTATTT TTTTGACTAA CCATTGAATG 
    ATGAANAAAN AAAAGCATAA TATGGACCGG TTACCTNCTN NTNAGGNANT 
    GTTTNTTGGT TANTACNANC TCCGNNNTGN GATATAGANA NCTNCGAANT 
    TTTTTTNTNN GNGGTAACAA GCTTTTTTAA AANGGCANGG GGGGGTNANA 
    NCNCCCCAAA TTTNTNNGCG NGAAANNCNC NAANAATTNN GNNNGTCAAT 
    TTATAAAGAG ANCANTTANA AGGCTNTNNG NGGGAAAAAA ATGAAATCCA 
    CATCCTGCCA TNANAACCTN ATGCTGGGAA AAANAAATGA AAAAATTTAA 
    AAAATTTCTT TTGGTTTATT AAATTAANAA CTTTAANACC GGNTTCTTTN 
    GTNTTTTTTT AAAANNTTNT GGNNCTTTTT TTAAAAAAAA AAACNTTNTG 
    NAAAATNANN AAAAANAAAN GGNNNNNNAN NNCCCCNGGN NNNTTTTTTT 
    GNGNAAAAAN AAA

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 124563 Blast hits to 121753 proteins in 3731 species: Archae - 157; Bacteria - 14240; Metazoa - 45960; Fungi - 14836; Plants - 27830; Viruses - 455; Other Eukaryotes - 21085 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.2

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.3

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 122907 Blast hits to 120110 proteins in 3700 species: Archae - 157; Bacteria - 14345; Metazoa - 44968; Fungi - 14295; Plants - 27583; Viruses - 455; Other Eukaryotes - 21104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.4

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR