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54-3725-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19278015 [Map]; Strand: w
      • AT2G46915.1 - [+] show detail - Protein of unknown function (DUF3754)
        Distance: -242; Region: promoter
      • AT2G46920.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon5 (3UTR)
      • AT2G46920.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-3725-1 - 5-prime edge 
    GTTGTAACTA ACATTTTCAT AAATAGCTAT TTTGATCAAT TTTGGATTGG 
    GAAGAAGGAA AAACAGAATT AGGCCTTCTT TTTTTGAACT TCCGGGAAAT 
    TGAAAGATTG TTTGAAAACA ATAAGCCAAA ACCTAATTTT TTTTTTTTNG 
    GGTNGGGTAA ATTANTNNNT GNAATTTTNG TTTNNNNTNG GGAAAANNTG 
    GCCNAAACAA NCCCCAANNC NTNCNTTAAG GGNCCCCACC CTNNNCANAA 
    NCNTNNTNNG GGNCCTNCNT TTTTTNCCCT NGGGGAATTN CCNNCAAANN 
    NNNAACCCCC NNCCCNNCNA AANNNGNGGG TTTNNTTTNN NNNTNACCNG 
    GNNGTTNACC CGNCCNAANC CANTNTTNGT TNANTNNTAA AANCNGCCCC 
    GTNNTNGGGG GCNCCCCAAA AAAAAACCNN TNNANNNNGG TTTNGNCCNG 
    NANCCCNTTN NGNANCNTTT TCAANAANCC ANNNCCNGNN NCCANNACCC 
    NTTTNNNGGN NNANGTTTNC NNCCANCCCT NCCGGGGNTA AACCCTTNAA 
    NCAANCNTTN NAANCCANNN NGGNANGGNC GGNNCNCGGT NCCATTNGAA 
    NGNCCGGGTN TNTCCCATNG TCCTTTCCTG GAANCATTTA AGNCAANGTT 
    NCNANCCGGG GCCGNNACCC GGNNNNNNTT NTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19277899 [Map]; Strand: w
      • AT2G46915.1 - [+] show detail - Protein of unknown function (DUF3754)
        Distance: -126; Region: promoter
    Flanking Genome Sequence: 54-3725-1 - 3-prime edge 
    GTTACAACTA GAATCAGAAT CCTCTGAATG AGCTAGAAGG TCTTCTCACC 
    TGAAAAAGTC AACGCGTGTG GGTCGTTTTG AGCCGTTAAT TTACAATTTC 
    GTCTTTATTC GATTTTTTAT TTTCTGGGCN GGAGCTAATC AAAATCCAAT 
    TCTCCGGCTT CTTCTTTTGC TTCTTCTTCA ATGGTCACGA ATCTTCTGCG 
    AATGTGTACN TGAATCTCTC GTTTCAGCTA AAGATTCAGA TTCATTATGT 
    TATCTCTTCG AAACCTCACT ACTAGCTTCG TCGCTCTTCC ATCTCGATCT 
    AAGCCGTCGT CGTCGCCGTC TTTGCGTCGT CGGTTAGTTC GTTGTCGACT 
    TACGGAGGCG GCAACTTTTT CACCTATTGA TGTAGTTTCT GGAGAATCGG 
    AAAGAGCGGT TGGTAGCTTA ACTGAGCTTA AAAACGGCGG TGGCTGGAAG 
    GTGGAAGATG AGCTTCCCTC GGCGGAAGAT GGAGGTGAAG GAGGAGTAGA 
    AGATGACGAT TCGGAGGAGG AGGAGGGGAT TTCGAGTATT CATGTTCCTC 
    GTGAGAAATA CATCAATGTC TCCAAGTCTG ATCTCGTTAA TGGTATTGTA 
    ACGAAGCT

AT2G46915.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3754)
Computational Description
Protein of unknown function (DUF3754); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3754 (InterPro:IPR022227); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3754) (TAIR:AT3G19340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46920.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Curator Summary
Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.
Computational Description
poltergeist (POL); FUNCTIONS IN: phospholipid binding, protein serine/threonine phosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: poltergeist like 1 (TAIR:AT2G35350.1); Has 1941 Blast hits to 1802 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 295; Plants - 1017; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46920.2

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Curator Summary
Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.
Computational Description
poltergeist (POL); FUNCTIONS IN: phospholipid binding, protein serine/threonine phosphatase activity; INVOLVED IN: protein myristoylation, regulation of meristem structural organization, protein palmitoylation, regulation of transcription, maintenance of meristem identity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: poltergeist like 1 (TAIR:AT2G35350.1); Has 1941 Blast hits to 1802 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 295; Plants - 1017; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR