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54-3762-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21488210 [Map]; Strand: w
      • AT5G53000.1 - [+] show detail - 2A phosphatase associated protein of 46 kD
        Distance: -219; Region: promoter
    Flanking Genome Sequence: 54-3762-1 - 5-prime edge 
    CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TTTCTCCGGG AGAGAGAGAG AGAGAGAGAN 
    TGCACAAANG GCGAAATTCG CCATGAAATT TTCTTGATTT TTGTACGAGT 
    NGGAGTATGA ATAAACTAGT ATCGCACCCG CTGTCTAACC AGCCCGAATT 
    GTCGTAGTGT TATTGATTCG ATCGACCTAT AGCAGTANGG ANTGGNGGAT 
    ACCGATAACT AAAGCCACCT CAATCGCGGN GAATCAGCTG GATCCAAAGA 
    TTTAGGAACA TCCAACANAC AATTCATGAA TCGAAAACGA AGAGGTGCAT 
    TGATTGAACA GAGCTTACTA TATATACTAT ATATGACTGT CACCCATTAC 
    AGTCTACATA GCTTGAANGG GAAATGGATA CAGAACTTAA NTGTNTGACT 
    TTCACGCATT TCACTCGACA TATCTTGAAG AGGAAAATGA ATTGACTGAA 
    TAAACTGTAG TATGCTATAT ACACAGCACA ATAATCCGCA TTATTTAATC 
    TCTCACGCAC ACCCGCGCAG AGAACAACAG CCTCCTAAGC GACCAAAGCT 
    AGAGGGATGC TTCAAAAGTT GACCTGAGAT GAGANCTGCN AGTTGAGAGA 
    AACTACTTGC CAGATNANCA GCCNN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1585499 [Map]; Strand: c
      • AT3G05480.2 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
      • AT3G05480.3 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
      • AT3G05480.1 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-3762-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTTATATGCT TTATCGGTTC CTCCGTAACC CTAATTTTAA GGATTGGCAA 
    GTATTTGGTG CGACTCTTGC AAATAAATTG TTTATAAGTT ATTTTCGTCA 
    CCTTGTACTG ACGATTAGGG TTTTTAAGTC GATGATTACN TTTATCGCCG 
    TTAGTTTACC CAAAATCTTG TGTCCAAGAG TTTGGTTCAT CGTTTTCTGG 
    GCAAATGCTT TAAGAGGCTT AGGAACGCTG TGTTGATTGA ATTTGTAGTT 
    TATCACCTCT TTTAGCTGAA CAATTCGTCA CATTACTCTG ATTTTACTGT 
    CTACTTTATT CGCCTTGTTA GATCTAATTT CTTTTGTTTT GTGCATAACT 
    TTGCAGCTGG CATTGCACAC TTTGAATGCT TCACGTTCTG CCTATCAGTG 
    TATCACATTT CAGTCAAGTT TCTTTGATGT ATATACTGTT TCTGGTCCTC 
    AAGCTCATTT CAGTGTACTT TTGAAGGTAT TTTTATTGTC ATTCTGAAAT 
    TTTTAGCAAT GAAATTCATT GGTGTAAGTA GTAGTCGCTG ATATTACTTT 
    TTACCCAGGC TGTTTGTTCT GTTCTTAGGA CCCCTCTCGC GAGCATTGGA 
    TCACATGAGT ATGCAGTTGC CAGATCATGA TGCATCTAAG GTCAAATGGA 
    CTTTGCAGTG TTACAGTGGT AAAAGCTATA TTTCCTTGNT CTTACACATT 
    GNTTGCTCTT ATCTGCAATT ATCACATTCC TTAG

AT3G05480.1

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05480.2

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05480.3

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552).
Link
InterPro Scan - TAIR

AT5G53000.1

Model type
Protein coding
Short Description
2A phosphatase associated protein of 46 kD
Curator Summary
PP2A-associated protein with a possible function in the chilling response
Computational Description
2A phosphatase associated protein of 46 kD (TAP46); CONTAINS InterPro DOMAIN/s: TAP42-like protein (InterPro:IPR007304); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR