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54-3773-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11584195 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 3648; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 2321; Region: intergenic
    Flanking Genome Sequence: 54-3773-1 - 5-prime edge
    ACCGTGACGT TATTGATTTT TTTTTTNTTT CTNGGGNCAA GTTTNGGGTN 
    GGGCNGAATT TGGTTNCTTT GGTAANGTCC NGCTTTTTNG TAACCTTNNA
    GGGNGTTGGN AGGTTTTTTN GCGNNAAANA TNATTGGTTT TNGGNAGGGT
    TGNAGTTTNN AGGGTTAANG TTGGGGTTTG NAGTTNNAGN GCATNGGGTT
    NNAGNNATTT NCGGGTCNGG NAACGNGNCN GTTTNNAAAN AACGGGGGTT
    TNCCNATAGG GGNAGTAACC AAAACAAGCN AAAACTNANT NNTTAAAANA
    CAAANAACCN GTCGNNANGA CCCACCAANC NTGAAAATAN AGGGANANAT
    ATCNGACCNG TCNTATNCNC AAANATNTCA NCNTNAGTCA ANAAACACAA
    CCCCTTACTN GGACTNACTA CTAANCCAAA ATTTCACCNG AANTNCACCN
    CATAACCCAT AAAANGAANC CACAAAATCA ANGCCAANAA AAAAAAAAAC
    TGGGTAANAG GNGTTAANAT AGCCAAAATC NGACCGCTGG CTAACTTAAT
    NACTTNNAAT CTGGANGNGN ATGACAAANA TCCAAGCTGA AAAACATAAC
    TATCAAAAAC AATCTACCCA TGAGGAACAA AACGGNGGAN ACCCCTTANG
    AGGATAAAAA GAAACTCCAA TGCNTNATNT AGGCAACAAC ATAAATGGAA
    ACAGGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11584091 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 3544; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 2425; Region: intergenic
    Flanking Genome Sequence: 54-3773-1 - 3-prime edge
    GTCACGGTTA ATATCTTTTT TTCTTATTGG TAAGAACTTT GAGATCCTGT 
    TGCGAAGTCA ATTTCAGGTA AGTATCTTTA TCTTCCTATT TTTCTTCCGT
    TTTTTTATCT CTTACAACTT ACAAGTTACA ACTATTAATC TTTTTGTTAA
    CAATTTTGTA CTTTGTATGC TATTCCAAAA GAGAAATTCA AGCCACTACA
    AGCGAAAATG GTGTCTTACA TACAAAAGTA AAGAGGTAAC CAATGTATTT
    ACTTGATGTA ATCTTTTTGT TAACAACTAG ATATGTTTCG TCATGTGATT
    TTAAGTGAAG GGGTATCGGT GATGATTCAA AATCCAAGAA AAACACTAAA
    GTTTTAGGGT AAAGCT

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR