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54-3778-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17235341 [Map]; Strand: c
      • AT4G36520.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3778-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCNNN GGAACCACNA CNNCTACTTA GCTAGGCACA 
    CATACATGGT GGAACCACNT GAGATANNNA NCCTCNNNNC AANNNANCAA 
    GNNATGCNAC NACAAGNNAG ATTGTNCANA NGAGANANAN GAANCTTANG 
    CNNNNGGGCT TANNCAATNC NAGGACTATA TCTNGGACTT ANATNTNNAT 
    NNAAAGACTG AGGCCTANGT ATNCNNNNGG TGANAANCCA GCNNAGATNG 
    CNAGNGNNGT GAGNCCTTNT GCGNTCACAG CTCCANTCGG CTGANTGANC 
    ATGGTTCCAG CAGGTACANG GACACTNNAG GAGTAAGGGA CCATGTAGAC 
    GCACANANCT CTTGCANTGT GTACGACATT CCAACCTTTN CTGAATAGAT 
    GATTTATNTG GACTTATNCC AAAAGTANAT AGAANAGTNC CCGGTCAANA 
    GCNACCNACN CGNGNCGAAG TCCANTCATG CCTCANGTGG TACAGAACAT 
    TCTGGCAAAA GTCCTTGCTT TTCTAATGGT ANAGACTCAT ATGATTCCAT 
    TGATGGAAGT ACAGAGTTCA ACATTTCTTA TAACAAAGCT AGTCAGATAA 
    GCGGCGGTGA GACAAATATG TCCTCAAGTG GTGTGATACG TGTAGCTGAT 
    CTTGGTGCTA TTCCTGGNTA CACTGNCNCA NNTGATGGAA CAACAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10521590 [Map]; Strand: w
      • AT1G30016.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -375; Region: promoter
    Flanking Genome Sequence: 54-3778-1 - 3-prime edge 
    AATTATTATT TCTTCTATAC TATTATAAAA CTGTAGTTTT TTTCCAACTT 
    ATATGAGTCT GAAACGATCG AGTTTAACAG TGTCTTTTAA AAACCTTAAG 
    CATTGGTCTC TTAACTTTTT GTCACAAACT TAAATTTCAC TATCGTAAAG 
    TCACAAAAAT GCAAATAAAG AACCAAAATA CGGATGAAAT GATGATATAA 
    AATACTTTAT ATACATATCT CTCCAATCAT AAAGAATCTT AATCTCATGA 
    TGGCTCGTAT GTAAATTAAT TACATACGCC ACATATGCTT ATAGTATATT 
    CGCATAAATG AAAATGCATA TGAATGCGAA AAGGAAGTGA TAATGTTGGA 
    AGAGCAGAGA GGACTGGTAA AGCATGTGCA TGAATATGTA AACTTTAATA 
    TTATTACCTT CTGAAAATAG ACCATTCGAT GGACCGTTAT TCGTGTGGGG 
    CGCTTATAAA AAAGGGGTTT CGTAGAATTG ATGAGTCAAA CTGGAAGAAT 
    CACCCAACTT GCACAAAAGG TTGACATGTG ACCGGTCAGC TTTCAGCTAA 
    AAGCAATTCA CGCACGAAAA CTACACCTAA TTAAATTGCC TATAACATAA 
    TTAAAAATCT TAATGTTTTT AGCAAAGTAT TAAGAAAACA GTTTCAGGAA 
    AATCAATCCT AAAATAAATT GGAGTTGAGG GTAATCTCTT GACTAGTTGC 
    AAATGATAAG ATAACATCAG GTCCTAGACA T

AT1G30016.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36520.1

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G12770.2); Has 187564 Blast hits to 104912 proteins in 3501 species: Archae - 1251; Bacteria - 31029; Metazoa - 79517; Fungi - 15919; Plants - 9547; Viruses - 688; Other Eukaryotes - 49613 (source: NCBI BLink).
Link
InterPro Scan - TAIR