1. Home
  2. Mutant Lines
  3. 54-3779-1

54-3779-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3856150 [Map]; Strand: c
      • AT5G11950.2 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: intron5 (CDS)
      • AT5G11950.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 54-3779-1 - 5-prime edge 
    GGGANAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCG CGTAGTTTTT GATACCAAAA CTTTCAACTT 
    TAACAATTAG CTAGGATTCA GTTTTAAAGC GTTTTCTCAC CAGGGAGTGC 
    AATGAAGGCC TCAGCTTCCT GTGCCATTGC AGCCTTTCGC TCATGCATGT 
    CTGCAACAAC TCTTACATCT CCCACAGTCT CACCAGATAT CTGATGCAAC 
    CCAAGTCATA AGATTAGGGG CACGATACAA ACCATACAAT CCCCAAAGAA 
    CATTGTTTTC TCTCCTGATC TTAAATCATA CAAACGCAGG CAAGAACCAA 
    GAGCTAGTAA TGCAAAAAAT GAATAACTCG CAGACACATG ATTCATCATT 
    AGACAAACTT CAAAACTCCA GCCAAGTTTA CTACTTCCTG GACAAATGAG 
    CTTCTAGAAG AAGATACATA CCTCAATTGG CATCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3856205 [Map]; Strand: c
      • AT5G11950.2 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: exon6 (CDS)
      • AT5G11950.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-3779-1 - 3-prime edge 
    GGTTTTGTTC AGGAGGTTAT GGAACAATGG AGGAGCTGTT GGAGATGATA 
    ACATGGTCAC AACTTGGTAT CCATAAGAAG ACGGTATTTT TAACATTTCC 
    TTTGCTCAGT CAAAGAAGTA TGCTACTAAT TCCTCTGTTG ATTAGTTTGG 
    GATTGTTTCT GTAGGTTGGT CTATTGAATG TTGATGGGTA CTATAACAAT 
    TTGCTTGCTT TATTTGATAC CGGTGTCGAA GAAGGTTTTA TCAAGCCAGG 
    TGCACGTAAC ATTGTGGTTT CTGCTCCAAC AGCCAAAGAG CTTATGGAGA 
    AGATGGAGGT ACATTAAGTT AGCCTTCCCT TTTCTTCTTA TTATGAGGTT 
    CTGCTTTTAC TTCATCTTAT AGAGAAGAAA TCAATGGTTA TCTCTTAGTC 
    AACACAATCT CTTTAAAAAT CAAAAGGAAC AGCAATTGCG TTTCAATAAG 
    CT

AT5G11950.1

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Curator Summary
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description
Putative lysine decarboxylase family protein; FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 4835 Blast hits to 4834 proteins in 1455 species: Archae - 28; Bacteria - 3320; Metazoa - 8; Fungi - 132; Plants - 375; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11950.2

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Curator Summary
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description
Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR