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54-3819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26498273 [Map]; Strand: c
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: -418; Region: promoter
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -596; Region: promoter
    Flanking Genome Sequence: 54-3819-1 - 5-prime edge 
    CTCTTTAGGG TTATTTTCGT TATTTCACCT TAATCCAGAT TCACACTGCT 
    TAGTGCTGCT TACAATAAAA ATACTTTAGT GTTGGGGACA TTTAACTTTT 
    TTATTCTAAA TAAAGCGTTT TAACNTTAAA GATGTGAAAT CAAAAACCAA 
    TGAGCGGGAA GTATTAATTT CCCAAGATGA GCGGCGACCA ATGCGGTCAA 
    GGGCAAATTA GGAAAGACAC GTAACTTTTT ATTTTTATTT TTAAAACCAA 
    ATCTTTGAAA AATAAAAGAA AACGAGTGAA TATGATTTTA ATTCGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26498389 [Map]; Strand: c
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: -534; Region: promoter
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -712; Region: promoter
    Flanking Genome Sequence: 54-3819-1 - 3-prime edge 
    CTAAAGAGTA ATAATGGAGA AAAGCATGTC TTCGGAGTAA AGGCAAAGTG 
    AGGAACTGAG ATGATGCAGA AACCGAAGAC AAATGGCGGG CCAGCTTTTG 
    TCCTTCTAAC ACACCACGAG AAAATGATTC TCCCTCACTC ACATTATCCT 
    TCAAACCTTT CAAATTAAAA AACATTATTC TTCATTTTAC AAAATAAAAT 
    AAAAAATACC CATTCAGNAC CAAAAAATTA GGATTAAAAA GAAAAAAAAT 
    TATCCTTTTG GGGAGNANTC CTCCTTTTCC TTCNTTTCTA CAAATTTTTT 
    GGCCTTATTT TTTCAAATGG GTNAATT

AT5G66320.1

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66320.2

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR