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54-3826-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23108337 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G62475.1 - [+] show detail - transposable element gene
        Distance: -763; Region: promoter
    Flanking Genome Sequence: 54-3826-1 - 5-prime edge 
    CCGCCGATTA CGCGGCTTTG ACTGGAAATG AATTCATCCG AATCGAATGA 
    AGAAGAGCAA ATGAGGAAGC TTCTTAATGA AGTCTGAGTG GAGCTTCTTC 
    TCCTAGAGAG ATGGAGCCAT GGAGCAGCAG CCATGGAAGC TCGACGGCGG 
    TTAGCAATGG CGAAGTCGGT GAAAAGCCAC TGATTTACGG CGGAGAGCTC 
    TTCACGTATT TGGGCCTTTG TTTGATTAGA AGCTTTGAGT GATAATAATT 
    TTGACCCATT AAAGGCCCAT TGATCTGGTT ACATATAACC ATTGGGTCCA 
    CCAGGAGCAT TAAAGCGCAA ACGCATAATC ATCAAAGGTG TCAATTTCTT 
    TTTTTAGNTG GAAGTTATCT GTATGCATCT TATNNNNGGT TTANGGTCGN 
    GATATTTTCT NAANTTNNNG GNAGGGGACC ANTTTNTNTT CANATGNANG 
    GGGGGNCTAT NATACNTNAA AACTTNNNNN GGTNNNNCNN NGNNTNCNTN 
    NNAANTNNAT TTNTTTTTCT NNANGNTNGG NNGNNNNANT CNCNGGGCNC 
    ANCNCNNGNN GGGGGNANGN NGGGNCCNNN NCCTTNTTNN NAANGANGNG 
    NGGGANAGAN ATTTNCNTNG GAANNCCCCC NNCCCTTTNT NNAAANNACC 
    CCCCCCNNTT TTGGGGGGGN GNCNNNCCCC CNNNGNNNNN CNCCACCCCN 
    CNCNGNGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23108221 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G62475.1 - [+] show detail - transposable element gene
        Distance: -879; Region: promoter
    2. Chromosome: 3; Position: 23135135 [Map]; Strand: w
      • AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G62550.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
        Distance: -849; Region: promoter
    Flanking Genome Sequence: 54-3826-1 - 3-prime edge 
    ATCGGCGGGA GAGGAGAAGA GGAAGTACGA TTTTCCGGTG CTCTCTTCTC 
    TCGTATGATT CATTCTTCTA CTTATCATCC TTACCGTCAA ATTCCATTGC 
    CACACTCCTC TGTACAACTG CTTGATGCNG AGTCTTGGGT GTAGAGGTTT 
    CTCTAGTGGT AGTTCTAATG TTAGTGATGG ATGTGATGAA GAAGTTGAAT 
    CTGAATGCGA TAATGATGAA GAAACTGGGG TCAGTTGTGT TGAATCAAGT 
    ACTAATCCGG AAGAAGTANA NAGAGTCTGC NAAGGGATTG ATGAATGGTT 
    GCGTTAAATA AAAAATGGAA GCTGTTCTTG ATGAAATGAA ACTTGATTAT 
    CNCATGATCC CATCGGTGGN GGTTTAAAAA CGTTTTCANA TGCCTAGGAA 
    ACCNGCCTTT AGGGGTCTNN TNNTGGGCTT CAAAAAACAA GGGTTTGCCC 
    TTGACCCAAA ACCTTTACCC CCTGGGAAGN TTTTNACAAA AACAAAANAN 
    TTNAAAANAA ANGGTTTNGG NCCCCAAAAA AAGGGGCCCA AAGGGNTTTT 
    GCCNNGGGGA ACCTTCCCTT NCNNNGNAAA NNTNCNANCC NGGGCCCNAA 
    ACCCCGNNNN NNTTT

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62475.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.3e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT3G62540.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62550.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT1G09740.1); Has 3064 Blast hits to 3005 proteins in 732 species: Archae - 271; Bacteria - 1876; Metazoa - 108; Fungi - 22; Plants - 723; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR