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54-3831-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20406775 [Map]; Strand: w
      • AT5G50150.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -44; Region: promoter
    Flanking Genome Sequence: 54-3831-1 - 5-prime edge 
    CTTTGGGGTT GTGTTTCCGA CATAGTCTAA GCTTTGACAG GCACGAATTA 
    CCATTCAAAA GAGAGTGCTT AGAANGTGGG CCTTATGNCT TTNGNCTTNN 
    CCCACGTNAN NTACCCATAA CCTCATGTCC ATGGGGCCAA NACTTTACTT 
    CTCTNTNGAT GGTGATAANC GGGTCATGAT TATCNNNANC ACCCACATGA 
    CCAAGATTGG NCNTGGATTN AACANGNATG GNTAAGANCN ANTATGGCNC 
    ANTACCTGAA ATANAAAAAN NGGGAATNAN GATTANCNCC CTNATACGNG 
    GNTATTANGG GTCCCAGNNT CCCTGNTCAA ANTCCAAGNN NCGNGAAAGT 
    GGGAAAANGC GGGGGGNGAC NTGNCCCTGN CAANCTAAAN NGTGAATGCN 
    AAATGAANGA AAGNGGGGNA GACCAACCTT ANAAACCCCC CNNNNCCCNC 
    GANATTANNC AAANCTAANN NGANNAGNNN GGNTTCGCNT NCTTTTTTTT 
    GGNNTAAAAA AAGGAAAGGA AAATANGNGN GCGGAANCTA AATTTNATTT 
    TNTGGGNAAA NAAAAACANN AAAAAAAAAA ANGGGGGGGA NAATTANAGG 
    GGNAAATTTA ATATTTTANA NGNAANAANA ANAACATTAT TACCCCTGGN 
    CGGGTNTNTG NACCAAAACG GGAAANNTTT GNNTTAAGGG AAAAAAAATT 
    TTGCGGAAAA AAGGGGGAAC TTTAACATNT TCCNANTGGA AAAAAANGGN 
    GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20406659 [Map]; Strand: w
      • AT5G50150.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-3831-1 - 3-prime edge 
    CCCCAAAGCC ACTTACTTCA TCTCTTTCTC TCTTTTTTAT TTATTTATTT 
    TAAAACAAAA GCT

AT5G50150.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR