1. Home
  2. Mutant Lines
  3. 54-3837-1

54-3837-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13048013 [Map]; Strand: w
      • AT4G25540.1 - [+] show detail - homolog of DNA mismatch repair protein MSH3
        Distance: 0; Region: exon1 (CDS)
      • AT4G25550.1 - [+] show detail - Cleavage/polyadenylation specificity factor, 25kDa subunit
        Distance: -364; Region: promoter
    Flanking Genome Sequence: 54-3837-1 - 5-prime edge 
    GGGNAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AGTGGCGGTG TTGATGATTC GGCTACCGGA 
    TTCGGTTCGT GAGTCGGGGA TTTGGGTTTG GGAGCGAAGA AACGAGAAAT 
    CGTCTGCTGC TTTTGCTTGC CCATAATTGC TTTATTCGTA ATCTCCTCCG 
    TTTAAGAGAA ATGGAAGGTC GTGGTCGTGG CTATGGCGAA CTTGGGTTGC 
    CAATTTTCGC GCGCTTTCTT AGGTTGCCAA TCTCTCTAAT CCATCACTGT 
    CACTGAACAA CAAAGTGACG AAGCCATCGG TTCGGAGCGG TTATTATGGG 
    CCGGGTCTTT ATAAATGGGC CGGTATTTTT TAAATGGGCC TAAAGTGCCA 
    CTATAACAAA TGAGTATACT CTAGAAGTTG GTGGTGTCAT TAATTCTCCG 
    TCGAGATCGC TTCTCTCCCC GTTGCCGTCC GTCCCCACCG CTGAGTGATA 
    GATCGAAACA GAGAAACACA CACGGCGAAG AAGATTTCAC CATATTTTGT 
    CTAAGTGGAT TCTGTTGAGA GAGAGAGATG GCTATGTCTC AGGTGGTGAA 
    CACGTACCCG CTTTCGAACT ACAGCTTCGG AACTAAGGAA CCCAAGCTGG 
    AAAAGGACAC CTNCGTCGCC GACCGGCTCG CTCGTATGAA AATCAAGTAC 
    GATNCCTCTT TCCTTCTTTC TCTTTTTTGG TTTCTTCTTA TAGCTACTGC 
    TGGANAAGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2942549 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 23353; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -16545; Region: intergenic
    2. Chromosome: 4; Position: 2946996 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 27800; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -12098; Region: intergenic
    3. Chromosome: 4; Position: 2950907 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 31711; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -8187; Region: intergenic
    4. Chromosome: 4; Position: 2952329 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -6765; Region: intergenic
    Flanking Genome Sequence: 54-3837-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    CCACCGAAGA TATCCGCCAC TGTATCCTTC TCTCCTTCCA AGCGTAAGCT 
    ACNAGACCGG NCNGGAAGAG CACGCTNAGC NCTATGGAGT GGAATATNAC 
    TAGNAGGAAN GNGTATGATN GATNNTAACA ACNANAGCCG GANAANGNTC 
    TTATACGCAN AAGTNNCGAA GACNTGNANT AATATNNANT TCNAAAAANN 
    NATGAGGNCN NCGNCTACGG GNTGAAAGCT ACGCTAGCGN CTATGGAGNC 
    AAATATGACT AGATGTCATG TGNATGATTA AGTATNAGAA CTAGAACCAT 
    AACTGATTNC CAAAAGCTAA AGTAATGTTT CCTTGTTATA AGATACAAAG 
    CTAAAAACTC ATACGGACTT CGGCTAAGCC ATCAAAATTT TGAGAAGCAA 
    TAAGAAGCT

AT4G05610.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein, putative retrotransposon-like orf - Arabidopsis thaliana,PID:g4309868
Link
InterPro Scan - TAIR

AT4G05612.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 183 Blast hits to 96 proteins in 39 species: Archae - 0; Bacteria - 19; Metazoa - 58; Fungi - 4; Plants - 39; Viruses - 9; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25540.1

Model type
Protein coding
Short Description
homolog of DNA mismatch repair protein MSH3
Curator Summary
encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).
Computational Description
homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25550.1

Model type
Protein coding
Short Description
Cleavage/polyadenylation specificity factor, 25kDa subunit
Computational Description
Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397 Blast hits to 397 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR