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54-3846-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11732483 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -10919; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -6794; Region: intergenic
    2. Chromosome: 4; Position: 3952585 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1983; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4597; Region: intergenic
    Flanking Genome Sequence: 54-3846-1 - 5-prime edge 
    CCTTTAGTTA CACTAAACTT TGAAATAGTT TAACCTAAAA TATGTTATTA 
    TATCGTAATC ATGAGATAAT CATTACATCT TTTTACAAGA AAAAGCTCCA 
    CGTCTCCTCT TGTCGCTGGA AGCTACCANG NCGGGCCGTN NNCCNCNCTG 
    NGCCCTATNG CTTTGTGTCT TCTAACAAGA AAACTCTACT TAGGCTTTTA 
    AGATCGGGTT GCGGTTTAAG TTGCTATACT CAATCATACA CATGACATCA 
    AGTCATATTC GACTCCAAAA CACTAACCAA CCTTCTTCTA GCTTCTCAAA 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26319458 [Map]; Strand: c
      • AT5G65780.1 - [+] show detail - branched-chain amino acid aminotransferase 5 / branched-chain amino acid tran...
        Distance: 646; Region: intergenic
      • AT5G65790.1 - [+] show detail - myb domain protein 68
        Distance: -3490; Region: intergenic
    Flanking Genome Sequence: 54-3846-1 - 3-prime edge 
    ACTAAAGGAT TGTGTACATT TGTCACGAGA TTCATATCAT GAACTCACTT 
    CTTTTTTTTT TATCTTTANA ATACTTCCAA AAANAAAAAG TAAANGGATC

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G65780.1

Model type
Protein coding
Short Description
branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
Curator Summary
encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant
Computational Description
ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain aminotransferase 3 (TAIR:AT3G49680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65790.1

Model type
Protein coding
Short Description
myb domain protein 68
Curator Summary
Encodes a putative MYB transcription factor.
Computational Description
myb domain protein 68 (MYB68); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 84 (TAIR:AT3G49690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR