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54-3855-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 109479 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -676; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -868; Region: promoter
    Flanking Genome Sequence: 54-3855-1 - 5-prime edge 
    ATTATCTTGC TTCTATTGAC TGACAATTAT GGTTGAACTA GAATAAGGGT 
    TTATGGAGCA CGCAATTAGA CCTTTTCTCA TATTCTTTGC ATCTTTTACC 
    AACCAATAAT AATCCTACTT AAAAACTGGA ATCCAGATAT GTGTAGAAAA 
    AAGGTAGACT ACTATAATTG TGTATGGGTG GAAATGGATA TACGCTACTG 
    AGTAGGGGTT AGTTGGTCCA CTTTGGTGGT GGGCTTAAAA ATTGGAAACC 
    TCTTTTTTCC TCACAATTAC ACTTTTATGT GTGATTTTTT TTTTNGTAAA 
    GNANGGGGNA TTANTTGNCC NNCCCTTTNG CCCTNNTAAN CNCCCCANTT 
    TNANTTNNNN GGGGNAAAAN NNNNTTTTTT TTANNAAAAA AANACCNNAN 
    NGGNTTNANT TTTAANGGTT TGGGTTTNAA AGGGAACCCN NTNANCCNTT 
    TAAANNAGTT NAANCNGTTG GNCTTTNCCC ANNCNNAAAA TGGTTCCCAA 
    AANCNTTNNA AAAGGTTTNN TTNNNACCTT TTTNGNCCAG TTTTTTTATA 
    CNNCNTTTTT TAACAGTTTT GCCCTNTTCC NANAAAATTA ANANCTAAAA 
    AACTGGCCCA NTTTTTANTT NCCAATCAAA ANNNNNAANN NNNNNAATNN 
    NNAAGGGNTT AAANNTTAAN TTTNAAGGGT AAAAGNNAAA ANAAAAAAAA 
    AAAAANGGCC AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 109363 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -560; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -752; Region: promoter
    Flanking Genome Sequence: 54-3855-1 - 3-prime edge 
    AAGATAATTT GAACGTCCAA GTCATCATCA TCTTTTTTTT TCTTTCTGAA 
    ATTTCGTTTT ACAATAAACA AAGAAAGGTT CCGAGTCCTC AAGCATCTCT 
    CACGTCGGAG CAAGTTGCCA TGCACTCTCC AAAATAAAAT AAAAAACAGA 
    CAAAGACTTT AGACTTGTGA CTTTTCGACC TCATTATGTA CTTACTTACT 
    TCATCTTCTA TTTGGCACCC ACAAACAGTA GTTTCCACTT TCTTCCTCAA 
    TAAGTTCCAT TTTTGGATTC TTTCCTATTT TTACACAAAT TTGTTGTATT 
    CTAAAAAGTT ATATATTCTA TTTGCTGGGC TTTANATATG GGCTGGCTCT 
    GGATATGTGT GTAATGGATA CATATTAGTA AATAGTTAAG TCCAAAAAAG 
    AAATTATAAA CCCCCTATGT AGTTTGAAAA CTGGATCATG TGACAAAACG 
    AGCAGGGAAG GCCCATAATA AGGCCTAATA AGTAAGGTAA GCCCACAGAG 
    AAATATACTT ACGGGCTTGG ATTTCCGAAC CTTCCTAAAA AGTGGGACCT 
    ACGCGGCTGA GAAGAAAGAC GAAGGCCATA TCAGACCGGC GATAACTGAA 
    AAGTCAAAAG TCAAAATTCA AGAGGAAGAG GAGTTTCTAA TCATGTCTCT 
    CTCTGNTTTC TTCTTATTCT TCTATCAAAC CGTCAAGTTG GGAAACAAAA 
    CAAACTCGCA AGTTTAACA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR