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Mutant Lines
54-3866-2

54-3866-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 30220030 [Map]; Strand: w
- AT1G80380.3 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 26; Region: intergenic
- AT1G80390.1 - [+] show detail - indole-3-acetic acid inducible 15
  Distance: 1750; Region: intergenic

TGATAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
CCATCCTACT TTCATCCCTA GCTTTCCTTG TGAGAGAAAT CAAACCTCTC 
TAATGATGAT GATGATCCAA GTTTGAAGTT ATCTAGAAAG GCTTATATAT 
CTAGGGTTTC GAGCGTCTTC TTTATGGTTA GGGCGTCGTT TGTACCACGA 
AAATGTTACA AGACCTAGAC ATCCAGTTGC TCTGTAAGCT TTNATGNTGG 
AANCTCGGTC NCNNATNTTC TNANNCNAGA ACAAAATCNA GCTTNGATCN 
TCNGCTNTCN CNCTNNACNG AAGATGAACN GTGATGATNT TGNTCNGAGA 
CGACANGTCG GNACGCAGTG TCNACAATGA ATGAAGAACA CGACCANTTT 
CAGGCGAGTT TCCAACAAAN ACGCACGCNN CNNTGGACTT CGCAGGGGCC 
TTTTGATGAA AGGCAGAAGA AAGAAGCT

3 prime edge [+] show sequence

Chromosome: 1; Position: 30277318 [Map]; Strand: c
- AT1G80520.1 - [+] show detail - Sterile alpha motif (SAM) domain-containing protein
  Distance: 259; Region: intergenic
- AT1G80530.1 - [+] show detail - Major facilitator superfamily protein
  Distance: 634; Region: intergenic

TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
GCAATTAGAA GAAGCGAGAG AGAGAGAGTA ACTATTTATA AGCAAAAAAG 
AGGTTCAAAA GAAAAAAGGA AATTGCTAAA TCACAATTAA CGGTCACATT 
AAGATTTCCT TTTTTCTTTC ACAACTAAAC GGTCACATAA AGATTTCCTT 
TTTTTGTCTG TAATGAGTTT AATTAAGGTG AAGACTCAAC TCATTGCCTG 
AGTCAATGAT GTTGATGATC CGATCCTCAA AACTCACAAG TATACTAACC 
ACAACACTGT ATACTTTCAT GTTAGTATCA TGATTCATGA GAGTTTTAAA 
ATGGACTACT TCAAAGTCCA ATGTACGTTG GGACTGGCGG CCGAGAGAAA 
CAGAGAGCAT TATTGCTGGT TTGGAACAAA AAAGGTCGAG ACTATCTCTA 
AGAAAACCAA AAGCTAGCTA TGATGAAGAA AGATGACATC TCTTCTCTCA 
AAGAGATTTG GTTGCTCAAA TAGTCTCGTT TTCCGGTAGC TGATAGTCTA 
GTACAGCTTG TGGTCCGGCT CCTCTCTCAA AGAGATTTGG TTGATGTAAG 
GAAATCCAAA TTTTTCACTG CAAAGTCTAA GCCCATGGTT GTTTTACTTG 
TCTGTGTCAG TTGTTTCCGT TTTTATCGGT TATAAGTTGG GATCAGTGAC 
TGTAATACAA CTATCAAACA ACAACCTTAC AACCTCATCA AGAAGCCGAT 
ACATATAGGT TCTTCCACCG GTTTTTGGNC G

AT1G80380.3

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary: encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083); Has 1394 Blast hits to 1390 proteins in 211 species: Archae - 0; Bacteria - 214; Metazoa - 0; Fungi - 140; Plants - 53; Viruses - 0; Other Eukaryotes - 987 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80390.1

Model type: Protein coding
Short Description: indole-3-acetic acid inducible 15
Curator Summary: Member of a multigene family of Auxin responsive genes.
Computational Description: indole-3-acetic acid inducible 15 (IAA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1649 Blast hits to 1649 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1649; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80520.1

Model type: Protein coding
Short Description: Sterile alpha motif (SAM) domain-containing protein
Computational Description: Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80530.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 2493 Blast hits to 2437 proteins in 753 species: Archae - 26; Bacteria - 1395; Metazoa - 19; Fungi - 170; Plants - 599; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).
Link: InterPro Scan - TAIR