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Mutant Lines
54-3876-1

54-3876-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 227149 [Map]; Strand: w
  - AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: -545; Region: promoter
  - AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: -545; Region: promoter
Flanking Genome Sequence: 54-3876-1 - 5-prime edge
```
ATCAAGAGGC TCTAAGAATA AAGACAGAAT AATCATAAGC TGGTCGGATC 
AAGCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 227033 [Map]; Strand: w
- AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: 0; Region: exon2 (5UTR)
- AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
  Distance: -661; Region: promoter
- AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
  Distance: -661; Region: promoter

CTCTTGATCC ACACTGACTA ATCTCGTGTC AGTGGGTTCT TGTGGAGTAC 
TCCGATCCCA TCTCCAGAAA ATTCAACAGA GGATGCTTGC TTGCTTCATA 
GGTTCTCATG TCGATACTGT GTTGTGTTCC TGTACTTTGA ATGTGTGTAC 
NTGCTTGGGT TGTACCCATT GGTTGTGGAA GAAATGTTTA TACTCAGCAG 
GTCACGAGAG TGAGAATTGG GGATTAGCTA CATCTGATGA GTTTGAGCCT 
ATCCCTAGGA TCTGCCGCTT GATCTTAGCC GTCTATGAGG AGAATCTTCA 
TGACCCTATG TGGGCACCTC CTGATGGTTA TGGGATTGAT CCAAATCATG 
TTATTCTGAA GAAAGACTAT GACCAGACTG AGGGTCGTGT GACGCCTTAC 
ATGATCTACT TGGATCATGA GAATGGTGAT GTGGTCTTGG CTATTAGAGG 
GCTGAATTTA GCTAAGGAGT GTGATTATGC TGTTCTTCTT GATAACAAAC 
TTGGGCAGAC TAAGTTTGAT GGAGGTTATG TACATAACGG GTTGTTAAAG 
GCGGCCATGT GGGTTTTTGA AGAGGAGCAT GTGGTTCTAA GGGAATTACT 
CGAGGCAAAC CCGAGCTATT CCTTGACGTT TGTTGGACAT TCGTTAGGAG 
CAGGGGGTTG TTTCTTTGCT TGTCTTATTC GTGATTCAGA ACCGGG

AT4G00500.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00500.2

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.2

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.3

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR