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54-3877-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19615240 [Map]; Strand: w
      • AT5G48390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-3877-1 - 5-prime edge 
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCAN AACCATTGGG AACCTTGCTA GAACGTTCAG 
    AGCAACCGAG ACACGGATGA TCGGGCCTCT GGTGAAGCTT GTATGCNGGA 
    TNACTTGGCT GGTNNGCANA CNAAAGGNNC TTNNGCTNAT GANCATTCAT 
    ATGTAGCCCG TCTCATTAGG NNAAATGTCC ATGAGGTAAN NCCNGATATA 
    TAAAATTGCG TGAACATGTT NACNNTCNTA TNGNNCACAC TAAATCCCCT 
    AGAAAAACTA ATTAAAACAT GTAAAACTAT ATTTCTAATC GCTTCTTGCA 
    AACAGAATCT GCTCTAAGAC ATATTCATCT CTCATGGGAA TTATGCAAAT 
    CTTACTAAGA TCAAAATTCA TTTGACCGTA GATTTTTATG ATGGAAAGAG 
    TTTGTGGTCG TGTAGAGTTA TTAAGAATT

AT5G48390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Defective in meiotic chromosome segregation. It is involved in crossover formation and involved in both male and female meiosis.
Computational Description
ATZIP4; FUNCTIONS IN: binding; INVOLVED IN: female meiosis, resolution of meiotic recombination intermediates, male meiosis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Meiosis specific protein SPO22 (InterPro:IPR013940), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR