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54-3880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24217809 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -118; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -173; Region: promoter
    Flanking Genome Sequence: 54-3880-1 - 5-prime edge 
    ACTGTATTGT CTTCTAGGCT TATTGCTACA AATGGAAAAA TAAAACATGT 
    GCTAACTACT TTTACTTCAA TGCTCCATGA ACCGAACCGA TATGATTTTA 
    ATCAAACCGA AAAAATATTA TCCTAACCAA ACCAAACCAA TAAAGGGTGA 
    ACGAGAATTT AAAATTCAAA TAAATGGGCT TTAAAGTCCG GCCCAATCGA 
    TTTGCTTTAA ATGACAATAA TAACCTGAGA TTATAGAGAA CGTTGGTCCG 
    ATCTTCTTTC AATTTCAAGT TTTTCAACCT CTTCCCGCTT ACGAGGCCGG 
    GATATTCTAT CAACAGTCGT CTCTTCCATC GGCCGAACAA TTTCCGATTT 
    ACCGACTAGG ATTTTCGCCT ACAACTTCCG AAGAGATTTT CTCAGTGTAA 
    GTTTGAAAAA ACCTAGCTAT AGGATTCCGG ATTTCCTAAT CGNNAGATNA 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24217687 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -295; Region: promoter
    Flanking Genome Sequence: 54-3880-1 - 3-prime edge 
    GTCTCTGTGT TATGCTACAA AAGGCAAAAT CTCTAAAGCA AACCAAAAGA 
    TCGGAGATC

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60150.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR