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54-3882-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26458640 [Map]; Strand: w
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon3 (CDS)
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon4 (CDS)
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon3 (CDS)
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-3882-1 - 5-prime edge
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TCCTATCCAG CAATTCGCCT CCTTCGCACA
    ACCTAGAAGA AAGGCAAGAG TAAAATGTGA ATGCCACCGA TACATGAAGG
    ATAGACTATA AGAAATGACG TAAGTTATTG TGAAACTGAA CAACATTCTC
    GTGGCCAGAG AGAGCAATAA GAATCTGAAC CTCACGCTTG ACAGTCAGCA
    TCATCACACC AAAAGTTAGG CCCGAATAGT TTGAAATTAG AAAGCTCGCA
    ATTGAGGTCT CCAATACGCA AACCGCCTCT CCCCGCGCGT TGGCCGATTC
    ATTAATGCAG CTGGCACGAC AGGTTTCCCG ACTGGAAAGC GGGCAGTGAG
    CGCAACGCAA TTAATGTGAG TTAGCTCACT CATTAGGCAC CCCAGGCTTT
    ACACTTTATG CTTCCGGCTC GTATGTTGTG TGGAATTGTG AGCGGATAAC
    AATTTCACAC AGGAAACAGC TATGACATGA TTACGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26458628 [Map]; Strand: w
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron3 (CDS)
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron4 (CDS)
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron3 (CDS)
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-3882-1 - 3-prime edge
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCCC 
    AAGTTAGTCA GCATCTCTCA CTACTCTTTA ATCTATTACC GGTGGAATCG
    TAAGAAAGAA CCTACCTTCT CATTATTGAT GCTTTCCTTT TTTTATTTTT
    CAGGAAAGGT AATCGGTACT CCGAGAAAGA TGCAGCCGTT GTCGTTAGGC
    AGATGCTCAA AGTTGCAGGA GAATGTCATC TACACGGTCT TGTACATAGA
    GATATGAAAC CAGAGGTACA TTCTCTTGCT TATACCTCTT AGGATGTGCT
    TTTTGTTTCT AATAATAAAT CTTCTGCTTT TGCTCCTCCT CCAATTTCTT
    GCAGAACTTT TTGTTCAAAT CAGCTCAACT AGATTCGCCT CTAAAGGCTA
    CGGATTTTGG TTTATCGGAT TTTATCAAAC CAGGTTAGTA CTAGCTATCA
    AAATCCACAC AAGCAAAGTA AGTGTTAAGA GCCTATTCTG TTGATTTCTG
    TGATAAACAA CTCAATCCTT CACAGGGAAA AGGTTCCATG ACATTGTTGG
    TAGCGCCTAT TATGTGGCTC CTGAGGTATT AAAGCGCAGA TCAGGGCCTG
    AATCAGATGT ATGGAGCATT GGTGTGATTA CGTATATATT ACTTTGTGGG
    AGGCGGCCTT TTTGGGATAG AACTGAAGAT GGTATATTTA AAGAGGTGTA
    GTTGAAAACT TTCTTTCACT GGATTTCTAT CTATAGCTTT TCTTATTTCT
    TTCTCACTTC CTTACTAAT

AT5G66210.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 124563 Blast hits to 121753 proteins in 3731 species: Archae - 157; Bacteria - 14240; Metazoa - 45960; Fungi - 14836; Plants - 27830; Viruses - 455; Other Eukaryotes - 21085 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.2

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.3

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 122907 Blast hits to 120110 proteins in 3700 species: Archae - 157; Bacteria - 14345; Metazoa - 44968; Fungi - 14295; Plants - 27583; Viruses - 455; Other Eukaryotes - 21104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.4

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR