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54-3886-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 431815 [Map]; Strand: c
      • AT2G01940.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: -460; Region: promoter
      • AT2G01940.3 - [+] show detail - C2H2-like zinc finger protein
        Distance: -460; Region: promoter
    Flanking Genome Sequence: 54-3886-1 - 5-prime edge 
    CGTCCACATG TAAGGCTTGC CTTTCATCAA AATATTATGC AGGTTAGAGG 
    CTTAAAATAG CAATAGTTGT ATTGTATCTG CAAATTAGGA GAGAATTTAT 
    GAATATCGAT ACNGGTGCTA ACTCTTAGAT GATGTAAGAA GCAATTAAAT 
    AATAAGGTTA AGATACTTCA TTACTTCTAA TTAACTTTTT GACTGTCACT 
    CTCAAGTCCT ATAAATAGTG TGATTATACA TCACTAATAC ATCTTGCGTT 
    TCATTATTGT TAAAGCAATC CAATAATATA TAGACAATTT AAGAAAAATT 
    GTCATTGTTA ACTATATATG AATGTTATGT CATCATGTTT CCAACGTTGG 
    TCCACATACA TGTTAAGATT CTTTTCGAAT TACACTTGGA AACAAGGAGA 
    GAAAAAAAAA AGGTTTNNGG TTNTTGGGAN TAATCCAAGG ATAAAAANGC 
    NTTATNGCAT TAAATACCAA ATTNTGTANG TTTACAATAA TGCANACAAA 
    CAATTATTTT TTCTTTCTAT TGGGCTTATA TAANGGATGG ACTAGNGCCC 
    ATACATAGTT AGGGGAANAA AAAAGACAAN TTTTTCAAAT TNTCCNTGCG 
    TTTAAAAATA ATTCAAACCA ANAGTAAATG NGAAAGNNGN NTTANTNTGT 
    TTTTTAAAAC CCCTTTTTTA GTAAAATTNA TTTTCGATCC CTCNCCCCCC 
    GTGCCCTATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 431931 [Map]; Strand: c
      • AT2G01940.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: -344; Region: promoter
      • AT2G01940.3 - [+] show detail - C2H2-like zinc finger protein
        Distance: -344; Region: promoter
      • AT2G01940.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: -918; Region: promoter
    Flanking Genome Sequence: 54-3886-1 - 3-prime edge 
    TGTGGACGTA TGATCTCATA TATTTTTTTT TTNCNTTNGT TAAAAAAACC 
    NCNNGTANAT ANTCNNAACC NTAAAATAAA NGGTTNCAAA AAAAAAAAAA 
    AAANTTTTGG GGGGGGGNCA AAAAAANNNN NNNANTTTTT TNNNNCNNCN 
    AAANTGGGGN CCCCCCCNAA AAATTTTTTT TNCCCNNCNN CCCAAAAAAN 
    NNANGNTTAA AAAANAANCC CCAAAANCCN AAAAAAAAAA TTTAAAANNC 
    CCCNTNAAAT TNAAAAAAAA CCCCCCCCNT TTTTTTTTTT TTTTTTNCCC 
    CCCNNGGGGN NNNTTNCCNT TTNCCCCNNG GGGGGGTTTG GNNNNGGGNN 
    TTTTTNNGGN NAANCNTTTT NNNCNNNAAA NCCCCCTTTT TNNNCNCCNC 
    CCNNNANGGG NNNNAAAAAA AAANNGNTTT TTNAAAAAAA NNNAAANTTT 
    TNCCCCCAAN NNNNGNCNT

AT2G01940.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.2

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.2); Has 5058 Blast hits to 4353 proteins in 195 species: Archae - 1; Bacteria - 0; Metazoa - 3999; Fungi - 151; Plants - 716; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.3

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 13187 Blast hits to 8766 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 12025; Fungi - 55; Plants - 746; Viruses - 1; Other Eukaryotes - 360 (source: NCBI BLink).
Link
InterPro Scan - TAIR