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54-3901-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 167393 [Map]; Strand: c
      • AT2G01350.1 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -134; Region: promoter
      • AT2G01350.2 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -146; Region: promoter
      • AT2G01350.3 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -140; Region: promoter
      • AT2G01350.4 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -146; Region: promoter
      • AT2G01360.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: -604; Region: promoter
    Flanking Genome Sequence: 54-3901-1 - 5-prime edge 
    CACACAAGAG TATATGTTTT GACTTAGAAC TCCGTACTTG TTACATGTTT 
    GAGTGTTATG TTTTATGTTG AATTTAACTA AAATGCAGAC GTTAGTATGG 
    AATGGGCTTC ACAAATAAAA GCCCAATAGT ATGTTTTTTT GGTAGGGAGC 
    CCAATAGTAT GTTGGTTCAC CCAAATATCA TTTCTTTCTC TGAGAGCTGT 
    TTATTATATT CACACAAAGA AGACCAACAA GAAACAGAGT TGAATCAGTT 
    CTACAATGAT CTCTGTCTCT CGATTCTTGT CGCCTCAATT CTACGCAATT 
    CCAAGGTTTT ATCCGACAAA ACCCAATCTT TTAAGTCTCT CCTTTGTTCA 
    TTTCTGTAAT CGTGGCGACC AAACTCAATC TCAATTGTTT CAGGAGCTTC 
    GTGAAAATGT CTGCTTCAGC GACTCAAACG GCCGGAGAAG TTTCAATGGG 
    GATCAAGCCT CCTTCACACC CTACTTACGA TTTGAAAGCT GTTATCAAAC 
    TAGCCCTAGA TGAAGATGCT GGTCATACAG GTTCTCTCTT CACCTTCTAA 
    AGTTTCGATT TTTAATTTGT GAAATTGAGT TGGTCAAAAA TATATGATTT 
    GAGTGAAGGA GATGTAACGT GTATGGCTAC GATACCGTTT GATATGGAAG 
    TGGAAGCTNN CANACCGGAC NGNAGGCCCT GNNNCNTTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 167516 [Map]; Strand: c
      • AT2G01350.1 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -257; Region: promoter
      • AT2G01350.2 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -269; Region: promoter
      • AT2G01350.3 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -263; Region: promoter
      • AT2G01350.4 - [+] show detail - quinolinate phoshoribosyltransferase
        Distance: -269; Region: promoter
      • AT2G01360.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: -481; Region: promoter
    Flanking Genome Sequence: 54-3901-1 - 3-prime edge 
    CTTGTGTGTG TTTTCTGTTG TGTAATATAT TTCTGATTTC GTTTGTGTTG 
    CTGATGGCTT GTCTTAGATT GTGGATTTCA TTGCTGTCTT ACTGAAAACT 
    CGAAGTGAAG CAATAGGAAA AGAACTAGCT ATAGCTCATG AGCTATTAGA 
    AGAGTCCTTG ATCTGTTCTT TAAGTAAATA CACTCCATGG ATCGATTACA 
    AAATTTTAAA CTGTTTGTTA TTCCTGCTTG GCTAAATTCA TCTTTCAATT 
    GTTTATTCCA ACTATGCAGG TACCCGTATG GTACACCTCT GATCAAACAT 
    TTATGGCTTC TTGTCACACT ATTGATGCAA CTATCAGTCG TGCAGTTACA 
    CTTTCAGAAT ATTTGCTAGG TTGTCTTAGT AAAAGCATAG AGATATAATA 
    GGAAACCGTC CAAACACTTT TGGGTTTGAC AATAGTTGGC ACAGTATCTA 
    GTACTGATTT TGTCTCTTAA TGACTACTAA TAGTTGGCAC AGTATCTTGG 
    TTATTTACTT GGCTTCGTTG GCTCTTGATT ACAGCTTGGA AATGGGAATT

AT2G01350.1

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5853 Blast hits to 5853 proteins in 1914 species: Archae - 184; Bacteria - 3582; Metazoa - 59; Fungi - 129; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.2

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.3

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5825 Blast hits to 5825 proteins in 1916 species: Archae - 184; Bacteria - 3588; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1813 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01350.4

Model type
Protein coding
Short Description
quinolinate phoshoribosyltransferase
Curator Summary
At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.
Computational Description
quinolinate phoshoribosyltransferase (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase, N-terminal (InterPro:IPR022412), Quinolinate phosphoribosyl transferase, C-terminal domain (InterPro:IPR002638); Has 5862 Blast hits to 5862 proteins in 1918 species: Archae - 184; Bacteria - 3596; Metazoa - 59; Fungi - 124; Plants - 57; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01360.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G01390.1); Has 425 Blast hits to 414 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR