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54-3936-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9497528 [Map]; Strand: w
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -215; Region: promoter
    Flanking Genome Sequence: 54-3936-1 - 5-prime edge 
    TTCCCAATAC ATACATGCAC ATGGATTAGG AGAATAAGTA TATCGATTAT 
    GAGGATTTTA ATTCAAATAA TACAAGTGAA AATACTAAAT TAACACTAAG 
    AATTGTATAC TAAAGTGAAA ATTAATTAGT TTGCTAAATT AAATTAACTC 
    TTTAGTTTGC TAAAGTGAAA ATTAACTCTC TAGTTTGCTA AATTACTCTT 
    TTAGTTTTTA AGAATTGTAT AATTAGTTTA AAGTTTCGCT TAGTGCGTCA 
    GCAACAACTG TAGGCTGCGA TTGCATTTGC TGCTGTTTAA GGAGCATTTG 
    GTTTCTAAGG GTTTCATGTA CTGGATAGAA GAACTCGTGC TTGAGAGCAT 
    CCTCTGCGCT GATTCGTCGC CTCGGGTTAA CTATCAAACA TCTATCAACG 
    AGTTCAAGAA GCGGCCGTGG AATTGCGTCT AGAAACTCTC TGCTTTTTGT 
    GTTGCGTTCG CCCCATTTTC TCAACTCCAT CCCCTTCAAG TACCTTGACA 
    CGTACAATTC CTGAAACAAC AACACAAAAA TCTATGTGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9927735 [Map]; Strand: c
      • AT2G23321.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1217; Region: intergenic
      • AT2G23330.1 - [+] show detail - transposable element gene
        Distance: 91; Region: intergenic
    Flanking Genome Sequence: 54-3936-1 - 3-prime edge 
    ATTGGGAAAC TGAAATATAA TGTAAAAGTG TGTTTATTCC AATAGTCGAA 
    GAGAGTATTT ATACAAGGAG AGTTGCTCAT AGAAGATAAG AACGTATCTA 
    GTAAATCTAG GATTTACATA TATCGTATCT ACTCTAATAC CCCCCCTCAC 
    GTTGATGGTA CGTAATCCGT AACACCTAAC GTGGACAAGA GTCTTTCAAA 
    GGTCGGTCTT GGTAGCGACT TGGTAAGAAG ATCGGCGACT TGGTCTTCAG 
    TATAAATGTG TTCAGTAGTG ATGAGTTTGT CGAGAACAGC GTCACGAACC 
    TTATGACAAT CCGATTCGAT GTGTTTAGTG CGCTCATGAA ACACAGGATT 
    TGCCGCAATA TGAATGGCAG CCTCGCTATC ACAGTGCAAC TTCATAGGAG 
    AGCTGTGATG TACATCCAAA TCCTTGAGTA GAGCTTTCAA CCATTTCAGT 
    TCTTTAAGCG TATATGCCAT TGCCCTATAC TCGGCCTCAG CCGAAGAGTA 
    GGAGACTGTG TCTTGTTTCT TTGTCTTCCA AGAAATAGGA GAGTCCCCCA 
    AGTAAACGAC ATATGCCGAG AGAGATCTTC GTGTGAGAGG GCAAGCATTA 
    TAATCAGAGT CACAATAAGC ATTGATGATA AGAGAACTAT CTGATCGGAG 
    AAAAATGCCT TGCGCCGGTG AGCCTTTGAG ATAACGAACG AGACGGAGCG 
    CAGCCTNCCA ATGAGCAACC AACGGAGCTT G

AT2G23321.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23330.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR