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54-3967-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2946815 [Map]; Strand: w
      • AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G09600.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-3967-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ATCTAGTAGT AACTTAGCTA TTAAAAATCT 
    GCTTAGCTAA AAAGATCTGC TTCTTGGAGA TGTAACTAGG ACCTGATTCT 
    GCTGATACTA CTACTCCTCT ATGTTCCTTA GGTTTGATCG TGACNTGGAA 
    GAAGATTGAA GATTTTGTTG GTTCAAAGAC TGTGATTCAG GTTTTAAAAT 
    AGCTTACTCT GCATTTTTGG TCGCAGTTAC TTTGTGGCAA TGTTTTCAAC 
    TTATTTGACT TTGTACTGCA GATAAGGAGT CATGCTCAAA AATACTTTCT 
    CAAGGTTCAG AAAAACGGGA CATTAGCTCA TGTGCCACCT CCTCGACCTA 
    AGCGCAAAGC AGCTCATCCG TATCCTCAAA AGGCATCAAA GAACGGTTCG 
    AATATTTTAT AATACTTCTT AGTTTGGTTA TAGAGTTGAG TTTTTAACTC 
    ACATTTTCTT GCAGCTCAAA TGCCACTTCA AGTTTCCACG TCTTTTACTA 
    CTACGCGAAA TGGCGACATG CCGGGATATG CTTCATGGGA TGATGCCTCA 
    ATGCTGCTAA ACAGAGTTAT TTCACCACAA CATGAACTTG CTACTCTTCG 
    TGGAGCAGAA GGCATGCACA TTTGTCTATC CTTTTTGTTT TCTTCATTTT 
    ATTGGTAGTT GTAGTAAGAA TAGGTTCCAT CAAAGGACGT TTCATGTGCT 
    TATTATGGCA TATAACGCCA CTGATTCAGC TGATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2454954 [Map]; Strand: c
      • AT3G07680.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
        Distance: -336; Region: promoter
    Flanking Genome Sequence: 54-3967-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAAAAA 
    ATAGACCGTC GAAAACCGTA CCAAAACTCA CACTCCTTGT TACCGCAAAC 
    AAGATAATCT GATGGTACAC GTCAGAACAT TTGTTTCTTT AGCAAAGCAA 
    GTAAACATTC CACTGTGGCA AAGTAAAAAA CGAGAAACCT ATAAAGTCTT 
    CCTAATGAAA CGTACTGATT TTATGGAGTT TCCATTTTCG ACATAATATG 
    ACGTGGCAAT ATCTAAATGG TTTAAAGATG TTTTATCTCC AATGATATAA 
    CGCCACGTAA GCCCGCTGAC CAAATAACCC AAAGAGTAAG CAAGCGACGT 
    CGTTTATAGT TTGATGATCT TGTCGGGTAA CGAAACTGCC CCTTGAGTCA 
    AAACAGGCTT CTTCGTGTCC GATTCTGAAC GAGCTCGCTC TTTCTCATCC 
    AATTCTCTCC ACCGTCTTCT ACTCCGATCA ATCTTCAAAT TTTCTTAACA 
    CTCATCGACC AGATCGAGTT TCCATCGATC TAATCAATCA ATCATCAGAT 
    TTGATCTTCT CAAGAAGGTA AATCCCTCTC ACTCTCTGTG TCAAACCTAA 
    TCACCTCGTA GGAATCGAAA TTGGAACAAT TCAATTTGGT TTGGTTTGGA 
    ATCTCTAGTC GATTCTTCTT CTAAACGATT GAATTGCGTT TTGTGCTTTG 
    ATATAATTCG AAATTATTGT GGCAGATGAG CTTGAAGGCT ACGATCGTAT 
    TACTTGGGCT CTTATGGAGC TTC

AT3G07680.1

Model type
Protein coding
Short Description
emp24/gp25L/p24 family/GOLD family protein
Computational Description
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT3G22845.1); Has 859 Blast hits to 859 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 431; Fungi - 210; Plants - 147; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09600.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09600.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR