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Mutant Lines
54-3982-1

54-3982-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 1637383 [Map]; Strand: c
- AT5G05540.1 - [+] show detail - small RNA degrading nuclease 2
  Distance: 0; Region: exon6 (CDS)
- AT5G05540.2 - [+] show detail - small RNA degrading nuclease 2
  Distance: 0; Region: exon6 (CDS)

GTTTTGGGCT GGCTGATCTT GAGCAGTNAG TCCANTAATG AAAGTCCTAT 
AGTCAACAAC CGGGTGATTC GGTTTCACAG NACTCNTCAA GAATCACCTG 
ATTTATTATC ANCACAGTNN TGTNAAAAAC NAAAACGGAN CGGANAAGNN 
ANNAGGNNAA GGGTAGGTTT TNCAATGGGN TGAAGACACT CGGCCTNGGG 
GTCGAGTGAT GTGATCNAGT GACGGCNNNG GATTCNCGAT TNNNGCGCTG 
AGCNACNAGG TCGAGTGGTG GNGTGATGAT GNGGGGGGNT ANACTCGACC 
TNCTGGTCGA GTGATNTGAT TGANATGATC ATCCNGNGNC GGNGATNACG 
GNNNNCNTCC TCNTGGTCGA GNGGTGAAGT GAATTGGNGA TGNCCTNNNC 
TCCANTTGGG GGTCTNTNGG TCTNTTTTTT ATTACNATCN CCGGGCCGGT 
NGNCNANGCC NNNNNCTTNN TACTTNNNNG GNNGGANGNG GNNGGNCCCN 
NTGGCGCNNC TCGGTGGGGG GGNGGGNTCN CGGCCNNTNN TTTNNNTGTG 
NNTNGGTTGN GCNNGCTNGN TNTGGNNGAN TNNTTGGNNT GTNTTTTNNT 
NTTTGTGNGC NTTGTNNNNN NTTTNGTGNT TTNTTNTTTT TTTTTTNNTT 
TTNTNTTTTN NNTGNTTTNT NTNTNGGTNC TGTGNNGGGG NNNNGNGCGT 
GGTGGTNTNG GNGNTANGTT GTTNTNGGNT TNNTNTTGNG TTGTTNTTGT 
GNTTNNNTNN TTNTGTTTTN GNGGGGTGNG NGGATAGGNT ANGANANAAA 
ATNAAAA

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 3644980 [Map]; Strand: c
  - AT5G11420.1 - [+] show detail - Protein of unknown function, DUF642
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 54-3982-1 - 3-prime edge
```
GTGGTCTTAG AGTAATGTTT TGCACCCTAG TTTGAACCTT ATTTGTAAAA 
GATGTACTGA AGCT
```

AT5G05540.1

Model type: Protein coding
Short Description: small RNA degrading nuclease 2
Computational Description: small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G05540.2

Model type: Protein coding
Short Description: small RNA degrading nuclease 2
Computational Description: small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G11420.1

Model type: Protein coding
Short Description: Protein of unknown function, DUF642
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G25460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR