1. Home
  2. Mutant Lines
  3. 54-3994-1

54-3994-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 281767 [Map]; Strand: c
      • AT4G00690.1 - [+] show detail - UB-like protease 1B
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3994-1 - 5-prime edge 
    NGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGT ACATATTATT CAACGACGTT GAGTGGTTGG 
    AAAGGTTCAC CACAAAACTT CAACAGAAAT CAATACAAGA GCTCTCTTAC 
    TAAATCAATG AAACAGAACA ATCTTGCATT GCATCCACAA ACATTGATAC 
    AATATATTAA TTAGAATCAG TACCGCAACA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 188902 [Map]; Strand: c
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -1275; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -4977; Region: intergenic
    Flanking Genome Sequence: 54-3994-1 - 3-prime edge 
    GAANACGGTA GAGGTATTCA ATCAACATTC ATAATATGTA CTGATGAAAG 
    ATACATTCTA TCAACCAGCC ACTTGTTATT TTTTTTGTTT TTTGCTTAGT 
    TAGCTTTTTT CTGTGTTGCT TGAAATTGAC AAGCCACGCA TTACAAAATC 
    AGGTCTCTGA TTTTTCTTAT ATACAAATAT TTATAATTTG TTGTGGACCG 
    AATAAAAAAG GCTATCATTG AATGCAAGTA AATAATTTTG TTTTTGAATA 
    TAGTGACTAT ATTTGGGTGC TGACATGTAA AAAACTGTTT GAACAGCTCA 
    GAGATGAGTA TTGCTTCTCT GTGATCTCAC ATGCTTCGTT GCCAACAAAC 
    ACTAAAATTC TCAAATGTAA ATGTTTCCAA TTCGATATTA TAATGTTTAG 
    TACCATAGTT ACAGACTTAC AGTATTGTGC AAAAGACATA ATTTAGGAAA 
    AGTTCTTACG TATTCATTTT GGAAACGTAA CCACAATGCA CAGTCACATA 
    CCGTCCAGCC AACATAAGTT TGACACGTGG AAGAACCCGT TGAACATGTG 
    TATTGTTTTA TTGGGCCGGT CCCGACCAAA GCCGCATATC TATGTCTATA 
    ATATGACATT CATAGACTCT GCTCGCTTCA TACATGTTTG ACCAAGACAA 
    AAAAAGAATG AATTATAGTG ATGCATTATT AACAATGAGT CTTGACAAGT 
    ATTGATTGCT CGAGAAATTT TAATATTTAT ACG

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00690.1

Model type
Protein coding
Short Description
UB-like protease 1B
Computational Description
UB-like protease 1B (ULP1B); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1373 Blast hits to 1372 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 267; Plants - 349; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).
Link
InterPro Scan - TAIR