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54-4027-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44258 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1061; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1017; Region: intergenic
    Flanking Genome Sequence: 54-4027-3 - 5-prime edge 
    ATTCCAAACT AGTTTAGTAG GTTGGAGAAA GCTGACCACC AAAAAAAATT 
    TAATCTGACA AAACTATTTT TTTGAATATA TATTAGTTAT TGTGAAAATA 
    AAAACGTGAT GACATCATAG TGACATGGGC CTGCATGAAC AATTTAATCA 
    GATATGTTTT TTTTACCGCA ATNANATNTG TTATTACATA CATATCAATA 
    TTACTTCATT TTATCTNAAA TTATATACCT NATGTTTAAT TCTGGAATNG 
    TTTNCATAAC NAAATTTTTT TCGNTAAAGN NGCCATTTTA AAATNTNNNN 
    TAGAGTNCTA ATTAAGTNTA GGGGGGNGTG NTTGGAANAA AANGAGGGGG 
    GGNGGNGAAG AATNCTNCCA NNAAAATATT GGGNAAAAGG CNGGGNGGAA 
    AATATCTNGG GGGGGNGAAA AAAAACNTTT CCATCAACAA NNGGGNAGCG 
    GNCCNTNGGG CTTTNAATTN TTTNTNGGGG AAGGNAAAAA CCAAATGNCC 
    CTCCCCCTTN TTCNNTTTGG ANGGAANNGG NCCTTNTNGG TCCNAAAAAA 
    AAAAAACCNT TNGGTTAAAN TNNNGGNGGG GCNAAANNGG GGGGNGGGGN 
    NNNNNAAANT TTTTTNTAAG ANGATTNCNC CTNCCCCCCC AAAAAAAAAN 
    AACAAAAGNG GGGGGGGGGG TGTTTTTNCT NTTNNCNNGG ANANAAGNNA 
    GGATNCTTNG GNTTTTTGGT TNGTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44189 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -992; Region: promoter
    Flanking Genome Sequence: 54-4027-3 - 3-prime edge 
    TTTGGAATGT TCTCTTCTTT ATTTTTCTTT TTCTTGATTT CTTATGTTTT 
    TTATTTATGG AATTTTAAAA CGGATTGTTT AGGTCGTTTC TCTCGTTTCT 
    TGTTTTCTAA AGTTACTTTT GTAAACTCAT CTCCTCTCAA TTAGACAGTC 
    AATCATATAG TTATCTTTTA ATATATGTCT AGTTGATAAA AAAAAATGAA 
    AAAATACTGG TGGTAGTTCT ACTAATGTTT GTGTAAAAAA TCTGATATTA 
    TGAATCTAAT CAATAAATTT AGTGTTTTTT TTGGTTAAAT TTAGTAATAA 
    ATCTGATATT ATGAATCAAA TCTAATGTTN GGTTAAATTT AGTATTTTTT 
    TTACATAAAT AAAAACTGTA ATGTTGATGT ATATTGGGGA ATCAGTATAT 
    TANCTNGGGT AACTATNCTT CTGGAAATNC TTGAANATTT AACTATTTGC 
    AAAATTATAA TTTAGTCCCG AAAAATNCAG ACGACGGGAC ACGACANCAT 
    ATAAGCAGGT TTGAATCTTG GAAAATTTTG TATACATAAC CTATATAAAT 
    ACTAATGTTC TGGTTGGGTT CAAAAGCCTT TTCAAAAGTT CCATTTTTTT 
    AATTCAAGGA CATTTTACAT AGGAAATAAG GTTGAGTCAT AAAAAATAAT 
    GGGTTATTTT GNAAGGTTTT TTTTTGATTA AAACNCNCAT TTAAAAAGTN 
    AGTTTTTTTT CNCTACCAA

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00124.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR