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54-4055-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8151492 [Map]; Strand: c
      • AT5G24105.1 - [+] show detail - arabinogalactan protein 41
        Distance: -432; Region: promoter
    Flanking Genome Sequence: 54-4055-1 - 5-prime edge 
    CTTGATAAAC TAACAAAATC GGTGTTAAAA TTCATAATAT ATTTGTTTCA 
    ATAATACGAA ACCACATTTG TTTTCATTTT TCAACATTAT AAAAGATAAA 
    ATCCAAACTT CAACAAAACC ATTTCAAAAC CTACAAATAA ATTCTATCAA 
    TAGAGTCAAT GTTTAAATGT TCAAGATTAT AAAACTTACN GGAATTATAT 
    TAATGATTGA GTAATTAAGT CCTCCTATGC TACATCTAAA TGCTAAACAC 
    CGTTTTAGTT TGTAAATTAT CTAAATGTAA AGAAATGGGG AGCCCACAGG 
    CCGACGCCCG GAGCACGCTG ATGCCGAGGC ACGCCGTTAG GCGCGTGCTG 
    CAGACCACGA TCACGGCAGC GACGTCTCCA CAAGCGTATC AAAAGCCCGG 
    GCTTAGGCCG CCACCGTAAT CCGCGTCGGT CCACGCCCCG AATCGATCGG 
    CGGACCGGAT TGCTCCGTTC CGCATCCGAC CAGGAAGAAA CATAGTGAAA 
    TTACCTATAC CATTTAACCG ACTTGCTGGA TTTAATTCGT TTTGGTATGC 
    TCATCATTTG CTGGTTATTG CCTACGCTCT TCTTATCATC CATGGTTGTT 
    AAACGTACTC AATTTTATCT TGAAATGGTA CAGATGGAGA GTCTTGAGCT 
    TCGGAAGAGA AACTTCTCTT TNCACACTAA TGTTGATGTC ACCTTCAAAC 
    ATTATTATTA GCGTAACTAG TGTTTGGCTC ACAAAATCTC TGGAGGCAAA 
    TGATAAAACT CGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3301054 [Map]; Strand: c
      • AT3G10560.1 - [+] show detail - Cytochrome P450 superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4055-1 - 3-prime edge 
    CTCGGNTAAA NNNNACNAAG GTATTTTTNT TTCCCAGGCC GACGACCACA 
    CATGCCCTAT AGACNTCCAC CGGCTTACTT TTCGTTAAGT CACAGGGGNG 
    ACTGGAACCA ANNACTCNTT NTGGNTNTAA CATCCCTGTC GGGGTCAACA 
    TTGAGTTTTA TCTTCCCGGA ATTAGTGAAA ACCCCGAAAA ANACCNCGG

AT3G10560.1

Model type
Protein coding
Short Description
Cytochrome P450 superfamily protein
Curator Summary
member of CYP77A
Computational Description
UNFERTILIZED EMBRYO SAC 9 (UNE9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: double fertilization forming a zygote and endosperm, pollen tube development; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, embryo, sperm cell, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 77, subfamily A, polypeptide 9 (TAIR:AT5G04630.1); Has 33598 Blast hits to 33350 proteins in 1733 species: Archae - 49; Bacteria - 4240; Metazoa - 11965; Fungi - 6662; Plants - 9437; Viruses - 6; Other Eukaryotes - 1239 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24105.1

Model type
Protein coding
Short Description
arabinogalactan protein 41
Curator Summary
Encodes a putative arabinogalactan-protein (AGP41).
Computational Description
arabinogalactan protein 41 (AGP41); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, inflorescence, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 16 (TAIR:AT2G46330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR