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54-4075-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17645498 [Map]; Strand: c
      • AT4G37550.1 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: intron6 (CDS)
      • AT4G37550.2 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: intron5 (3UTR)
      • AT4G37550.3 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: intron6 (CDS)
      • AT4G37553.1 - [+] show detail
        Distance: 0; Region: exon3 (NonCoding)
      • AT4G37560.1 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: -910; Region: promoter
    Flanking Genome Sequence: 54-4075-1 - 3-prime edge 
    CCTACACCAT TATTAGCTTA TGATCGTAGT GCTCCAAGAG GAAAGCTTCT 
    GTTTAAACCT CTTGAGTTTA CTCTGTTCTT CACCCTCGTC TCTCAATAAT 
    TTGTTAGCAA CTGAAAAGAT AGGAATGCAA ATATGTTAAT TGCGTTTGTA 
    TGTTAATGCA GGATATTAGG CCAANGAATC GGAAGGTTCC AGTAGGACCT 
    CGGGTTGTGA GGAAACCAGA TGTACTGAAG AGCACATATG ATGGAAAGCT 
    TAGTGTTATG ATTTCAAGTC TCAATCGTCT TTCGAATT

AT4G37550.1

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37550.2

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37550.3

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1).
Link
InterPro Scan - TAIR

AT4G37553.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G37550 and AT4G37560
Link
InterPro Scan - TAIR

AT4G37560.1

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR