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54-4135-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26766878 [Map]; Strand: c
      • AT1G70985.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -1593; Region: intergenic
      • AT1G70990.1 - [+] show detail - proline-rich family protein
        Distance: 419; Region: intergenic
    Flanking Genome Sequence: 54-4135-1 - 5-prime edge 
    GGTCCAAAGA ACCANCCAGA GACGTGACAT GTACAATTTC ATTCTCTTAA 
    CTACAACACG AACTATTCTG TATTTTAAAT TTTGGAATTA TGCTAATTGT 
    CCCTCTCTTT TTTTTTACGC CTGCTAAATT TTTTTCTTTA CATCGATAAT 
    NGTTCTTTAA TATCTCGTAG TTTTTAGGAT TTTCTATATG GTCGTTCAAA 
    ATTTGGAGTT GATCGTTAAT ATTATCTATA ATGAAAATTT TGATTANACA 
    ATCAAAATTT GAACCTAACT TTATTTTTGN GTTATCACAT CCCTGCTTTA 
    CATTTTTCCG TAAGAGTATA AAGGATGAAN AAAAACCAAG AATCAAGAAA 
    TTATTATCAG TATCCAAAGG CTTTCTAATT TTGTATACTT TGATAAAGNG 
    GGAAATAATA GAGCAAATCA CAGCCTGTAC CTAGTTATAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26766950 [Map]; Strand: c
      • AT1G70985.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -1665; Region: intergenic
      • AT1G70990.1 - [+] show detail - proline-rich family protein
        Distance: 347; Region: intergenic
    Flanking Genome Sequence: 54-4135-1 - 3-prime edge 
    TNGTAANGGG ACCGAGGTAT TTTTTGACCG TTACCGACCG TTTTCATGGA 
    CCTACGTNTT GGTGGAAGGT ACTTTTCTCA CTCTCATAGG TCTAACTTGA 
    CCAGCTGAAC CTTTTAGTTT AGTGTTTTGA CGTTGACCCA CGAAAATGTG 
    GTTTTGACTT TTCTTGAACT TTTTTTTTAC AGCNTTCTTC TAAAATTACC 
    GACNTTAATT AACTTTACTT TACTTTACTT TGCTCCTAGC CAGAATTTTA 
    TATAAATGTC TCTTTTAGAT TCTTGCAATT GTAACTTATA TTTAAAGAAT 
    ATTGGTTTTT TANAAAATCA TCGCCACTCG AACNANNCCG GGCCGGGGAC 
    NACNCGTGCC CTNNNNNTTC CCNGCNGGCN CNNGNNTNNN TTGNGGTCCG 
    NACTNNNNTT NCNGNTNNNN TNTNANCNTN NNTGGTNCGA TGNGACNTTT 
    NGNCTNNCNN CCCATATNNT CATATTNNNC NCACNNNCCC CCCNNCCNTN 
    NNCNNNNANC NNGNNANANG TGCNNNNGAC CNTNCGTANG TNTATTTNTT 
    NCTTTCNACA ANTTANAAAT TNNTTTNTAC NTTTTCACTT NCTNNTNNCN 
    CNCTACATNC TTCNTTNTGA CTNNCNATNC ACCATNNCAA TAACGAAAAT 
    TATTATNGAN ACAAAAAATA TGCNTGACCA ANTNAGTATT ACAAATCNAA 
    NTANNAATGT CTNNCCGNNC GNNGNNGNGT GTTNCTNNNA NTNGNNNNTA 
    NGGTATANAG NNNNNNAGAN GAGNNNNNGG NANCGTTNTN CCCGNNNGGC 
    NGTCNCNNAT CNACNTCGNG NNGNCGCACG NCNCGTCANG NNNGGATATT 
    NNAAAGAAGC ANAAAAANAA CAT

AT1G70985.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G23050.1); Has 1488 Blast hits to 893 proteins in 162 species: Archae - 2; Bacteria - 187; Metazoa - 240; Fungi - 90; Plants - 878; Viruses - 17; Other Eukaryotes - 74 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70990.1

Model type
Protein coding
Short Description
proline-rich family protein
Computational Description
proline-rich family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G23040.1); Has 16801 Blast hits to 6974 proteins in 537 species: Archae - 26; Bacteria - 1654; Metazoa - 5189; Fungi - 1184; Plants - 5387; Viruses - 1054; Other Eukaryotes - 2307 (source: NCBI BLink).
Link
InterPro Scan - TAIR