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54-4142-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3111053 [Map]; Strand: c
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: -725; Region: promoter
    Flanking Genome Sequence: 54-4142-1 - 5-prime edge 
    GCTAGAATAC CCGTTTTTAT GTAGTGTCTA GTTGTATGAG ATGGAGTCTT 
    TGGATGATTG CGAAATGTGT TTAATATATA TAGTCCAAGA TAGGTGTAGC 
    CAAACTATTG GACTATCTTT TTCCACTCAA AATTAAAGGT CTTCAAATAT 
    GTGTGTTGGT GCAGGAATTT GTGGTTCTTT TTTTGTATGA AATAATGGTT 
    GAGGTGCACG GAAAGAAGCT CAAAACCCTT GAGGTAATAA GGTTCTTTTA 
    CAGCTACCAT TCTGACGTGC TTTTATATAT TAATTCTTCA CTACATTAGC 
    TTTTTTTTTC TAGGNAATTC GTCTAAAACC ACTTGTTTNN ACCANGTTAT 
    TATGCTTATT TTGATGNCAN AAANGNNANN NNCTCNNCTN NAGNATNCNA 
    CAAAANNAAN NAGGNNNNTN TGNNNCNNNN ANNAGAAAAN NANAGANTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3111169 [Map]; Strand: c
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: -609; Region: promoter
    Flanking Genome Sequence: 54-4142-1 - 3-prime edge 
    ATTCTAGCAC TCGGAAAATG CTATCTAATA ATAAAGTAAT GTTGCAAATC 
    TATAAAGTTG AGCAAGTAGA TATCACATGA TCAGTCTAAT TTCCATCTCC 
    CATAATTTCC TTCATTTGTT GAATTATTTC TCTATCAGTG TTTGATCAGG 
    TTAGAACATG TGGCGAGCTC ATGACTCAGG CCCATTAACA GGCCAGCCGG 
    GATTTCCCGG TTCAATCGAA TT

AT3G10100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR