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Mutant Lines
54-4190-1

54-4190-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 23222200 [Map]; Strand: w
- AT3G62770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: -968; Region: promoter
- AT3G62770.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: -968; Region: promoter
- AT3G62780.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: 0; Region: exon1 (CDS)

CCTGANATAT GACCTTGCAT TATACATAGC TNCGNTCGAG CAATCAGACC 
TGGCAAAGCG TACCAAGCCC GGGCCTGACN ACCACGCTGG GCCCTATAGG 
TGGCTTGACA AGGAACGGTG GNTGTAACGT AAACTGATCN ANNACTTTGG 
NNNCNACANG ACNTCAANAC AGGGTAACGT TCAAGATGGC TCAACACTGG 
GTCACCTGCA ACTGACTNCA ACACCGGGAC CATNCAACGT GACTCAACAC 
GGGACCGTTC AACTGGCTCA ACACGGGNCC GTTCAACTGA CTCAACATGG 
GTCCGTTCAA AACGGGCCGG TAGGNCGATA CAGGACGCAC CGGCGCTTGA 
GCTGCGNACC GTGAGCAGCC GCCACCGGTC GGGACCTCCA CCGGACCTGT 
GAACGAATAA GTGAAACTAA TATNGGCTTT GGATTTCCCG ATTTGATATG 
TGACGTATCT TTGACCGGNC TTATCGNTTC CAAGATGATC CAGAAGTTCT 
TTCACCTGAA CATGAACCTC GCCGATGTCT NTATCTACTC CTCCACGTTG 
CTCGCACTTG ATCTTGAAAG TGATCACAAG GCGGTTAGCC TCTGCTAAGT 
TTTGGTCGAG GATGAACTTC ATGACATCAT TGCTNCATTN GGGGCTGGTT 
NCACCGNCTC TTGCCGCTTG TGTNCGCTGC TCACGGTGGT CAGAGCATTT 
TTGGATCACC GGATANCTTC ACGGGCACAA AAACATCCAT

3 prime edge [+] show sequence

Chromosome: 3; Position: 23222151 [Map]; Strand: w
- AT3G62770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: -919; Region: promoter
- AT3G62770.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: -919; Region: promoter
- AT3G62780.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: 0; Region: exon1 (CDS)

TTTAAAACGG NAGAGGTATT TTANCGACCG TTACCGACCG TTTTCATGCT 
GTCCACCCAC AATGTATCAA TCTATATTTC CTGGCTTATC ATGTCCACCA 
GAAGGTTATT CAACGGTGGC TCCGCCGCTG ACACAACCGG GACTATATCC 
ACCGATGAGT CCTTACAGAT ATTAATTGAT TGTCAACGTC TGGAAGCCTA 
GTCGTCGGTT TGGAGATTTG TTGATTTTAT TTAACTAATG ATGTCATCAA 
TTCCCCCAAC TTGTGTGTGT GTTCTTTTTC TTCGAACTCA ACATAAAAAT 
TGTTGTGTGT TTTTTTCTCT CTTTNTAACA AAATCACACC CTAAATTGTT 
NCGTTCTTTA CTTAGACGTT NTTGGTTTGT NNAANGCNGT ATCTGTATCA 
TGTTTGCACT GNCTTGNACT NTCCAGANNT GGCNCACCAT TGATNAANTG 
ATNCNNNTGG AAAATGGNAT TTANCANNCC NTTTGGGAAA CCGGAATNAA 
AANTNTNACG TNNNNNNNNT TTTTGAAAAN TNNTGNACCT NANNTTNAAT 
TNTNAATNAA NNCTCTTNGG ANAAAAAAAA TNAAAAGATG TGNGGTNNAT 
TTTTTTTTTN ANAAAANANA NATTTNNCAA ATNNCANTNT TANCTTTACC 
TNNGTTNNGN CANAGANANN ANCCNAANTT TTTNNGNNNN ANNANTTCCT 
TNNNNNCCCA NCTTTTCNCN TNNGGAAAAA ANAAAAAAGG CTNNGTTTTT 
TNANAAAAAA ANANNCNNNN NTATTTTNTN TTTTNGCNNN ANNNNAAAAA 
AAAAAAAAA

AT3G62770.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Curator Summary: Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description: AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62770.3

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Curator Summary: Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description: AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 213 Blast hits to 211 proteins in 57 species: Archae - 0; Bacteria - 30; Metazoa - 48; Fungi - 45; Plants - 63; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62780.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1); Has 675 Blast hits to 575 proteins in 98 species: Archae - 0; Bacteria - 10; Metazoa - 206; Fungi - 19; Plants - 326; Viruses - 29; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR