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54-4197-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23351088 [Map]; Strand: c
      • AT3G63200.1 - [+] show detail - PATATIN-like protein 9
        Distance: 3524; Region: intergenic
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: 2527; Region: intergenic
    Flanking Genome Sequence: 54-4197-1 - 5-prime edge 
    NGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCCCACATTT GCATTTAACG GGGGCTACGT 
    GCTTCGACGC ATTGATGAGT AATTTAAACA GAAACACAAC TTTAGGCTTA 
    TTAATCACAT TTTAATGAAT TATTGTTTTT AATCGTTTTA TAATATAGAA 
    ATTATTTTCA TTTTTCATTA TGATTGTTGT ATGCTATCTT CAAATATCAT 
    CCCGCCTAGG ATCGTTATAA TGGCTTTGCA AAAACACGAA TTTTTAAAAG 
    AAAGAAAAGT GCATGGTCGA GCTTTAGGTT AATTTATTTT ATCACTTTGT 
    ATGCAGAACG CATAATTGTG ATATAAAAAT AATATTGAAT AAAGCGTGGT 
    ATTGGTGGGC GAATATGGTC CCAAATAATT TCGTGTTCTG TTCTTATATT 
    TTCTATTTCT GCATATTTTT TTATCACTCC CTNTTAATNT ATCATATTAT 
    TTACTTTGNN NAANGNNNAA NAACCNNNCN NNAATATTNN NTTNTNCNAC 
    CNNNNCCNTN TTGNNGGGNN TA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23351091 [Map]; Strand: c
      • AT3G63200.1 - [+] show detail - PATATIN-like protein 9
        Distance: 3527; Region: intergenic
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: 2524; Region: intergenic
    Flanking Genome Sequence: 54-4197-1 - 3-prime edge 
    CTTTGAANAC GGCAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    GTCCTTGTGT AATTAATAAC TCCAACTATA TGATGTGATT AAATATCTTT 
    CTTTTTATTT CAAATATCAA ATAAATAAAA AATAACATTA ATATAAAGAT 
    TGCTAATAGT GTTCAATGCA AATTTCGATA TTCAGTATAT CGACCATACA 
    AAGAATAATC AAGTACTAAT ATTTATATGG AAAAAGTAAA ATAATTAAGA 
    GTTTGTCATA ATATATTGTT TTATATAATA TCACGTTGAG ATAATGCGTA 
    TAAGAAGAAA AAGAATATAG ATGTGTACAG AATCCAATTA TCCAAGTACA 
    AATGTTTTAG AAATAACGTT TTGCAGCGTT GTTGTATAAG TACATAACGG 
    ATCATTTTGG CGGCGATTGA GAGATTCAAA AACGTCAAAG ATGAAAAGAT 
    TCTCGTTTGT TTTTATTTCT TTATTAAATA ATAACAATAG TGATTATATG 
    TTAGCTTTAT GATGTGCTTA GTTAATCCCA AAATCGGCTA TGATGAGATT 
    TAAGAAGCCC CAAATAAATA AAGTATAATG TTTGTGGCCC TTCTTCAATT 
    AATATAAAGA AACAAAAAAA TGAAGCCGAT GAAAAAGAAG AAGTATTCAA 
    CTGTTGCAAG ATATAAATAT TTGAATTTAT CCGTTACAAT ATACGAGTAT 
    GGCAGATTGA TTTATTTGTA CAAGTGATCC AAGCATTTGA TGTATAAGTA 
    AGTAGTAAAT CAACGAACAC CAAATN

AT3G63200.1

Model type
Protein coding
Short Description
PATATIN-like protein 9
Computational Description
PATATIN-like protein 9 (PLP9); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63210.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Curator Summary
encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR