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54-4198-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 654176 [Map]; Strand: c
      • AT5G02860.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4198-1 - 5-prime edge 
    NCTANANGCN GANGAGGTGG TGACGNAANG ANACAGTAAT ANGANANGGC 
    GTACTAGAGA TTTGGNCAGT TTTTNTCANT GGAGAATANA GNACCAACNA 
    NGGCCNNCNA CNACGCGNTN CCATANANAG NTNTCTTGTC CGCCATTAGA 
    GGTAGTAGTA GTAGTAGAAA CTAGAAAAGA ACCAGGAGGC AACCGAGAGT 
    GAAAGAAGAA GAGAAATGAA TGGATATTTT TGTCAGATTT TTTTTATTAT 
    ATTTTTTTGT TCCAAGAACA CAATTTTAGT TTTATTTCCC TACAATTATA 
    TTCNACCACG TGGCTAGTNC AGATTCAACA NGTTAGATNA NNANN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 654286 [Map]; Strand: c
      • AT5G02860.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4198-1 - 3-prime edge 
    CCTGTAGAGC CTCTCCTCCA CGATGTTTTC CTTCACCAGA ACCCTAATTC 
    CAGACAACCC ATCAGCTCTC AAACATCTAG AAACCGTAAC CGGACTCGAA 
    TTGGCAAGTC ACGTGACCCT AACCTCGGTA AACCTTGGTC TTACCATGGT 
    CTTTCTCCAC AAGGTCAGCA AGTTCTTCGT TCCCTCATCG AACCCAATTT 
    TGATTCCGGT CAATTAGATT CTGTACTCTC TGAGCTATTC GAGCCTTTTA 
    AGGATAAACC AGAGTCTACC TCGTCGGAGT TACTAGCTTT TCTTAAAGGA 
    TTAGGATTTC ATAAGAAATT CGATTTGGCT CTGCGTGCTT TTGATTGGTT 
    TATGAAGCAA AAGGATTATC AATCCATGTT GGATAACTCT GTTGTTGCTA 
    TAATCATCAG TATGCTAGGT AAAGAAGGCA GAGTATCTTC CGCTGCAAAT 
    ATGTTCAATG GTTTGCAGGA AGACGGGTTT TCGCTTGATG TCTACTCTTA 
    TACTTCGTTG ATATCAGCGT TTGCTAATAG CGGAAGGTAT AGGGAAGCTG 
    TAAATGTGTT CAAGAAGATG GAGGAAGATG GTTGTAAACC GACTTTGATA 
    ACGTATAATG TTATCTTGAA TGTGTTTGGG AAAATGGGTA CTCCTTGGAA 
    TAAGATTACG TCTCTTGTTG AGAAGATGAA GAGTGATGGG ATTGCTCCGG 
    A

AT5G02860.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink).
Link
InterPro Scan - TAIR