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Mutant Lines
54-4215-1

54-4215-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 9490571 [Map]; Strand: w
- AT4G16860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: 0; Region: exon3 (CDS)

CTTAAAAGTA GATGGCAAAG ACTTCAATGG ACAAAAATCC CATTCTAGCA 
ATCTGAGTTT AAGCGGCAAA TAAACGAGGC TCTGAGGTAG ATCCCCATCT 
GACCAATAAT GACCAATTTC TGACAAATTT CTCTCAAATT TATGCCACTG 
AGGTAGATGC CACTGAGGTA GATGCCTATC TGAAAACTGA CCAATTTTTA 
GATATTGGAG ATTACGCATG CCTTTGAACG ATTCTTCATC TATTTTTGAC 
AGCATTGTCG TAAGAAATTC CGTGGGTGGC AAACGTATTC CAAGAAGAGT 
TACTGTCCCC TGAAAAAAAA TCCGAAAAAA ACTAATATAA TCTTAACAAT 
CGCAACCTTT TTTTATTTTT CTGACACATC AAAGCTACGT TTTAATTACG 
CATGAGGCAA CAGTTGCTTA AGTTTATCAA TCCCAAAATT ACGATTATAT 
TAATATAAAG TCATGCATTC AAACGGAGCT GCGAAAAACT TACAGTTTTC 
TCGGTCAATA CTTCTTGAAT ATCCTCAAAA TTCGTCAGAA ATTGACGTTT 
TCCAGGATTA CCCTTGGACT TTGCACGATC AATTTCTCTA CCCAATTTCT 
CTAGCAAATT GTGCATCTCT ATATCTCCAT CCGGTGTAAT ACGTATGAGG 
GACTTCTCAG CCAACATTGT AN

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 9490500 [Map]; Strand: w
  - AT4G16860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon3 (CDS)
2. Chromosome: 4; Position: 9503385 [Map]; Strand: w
  - AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
    Distance: 0; Region: exon3 (CDS)
3. Chromosome: 4; Position: 9542203 [Map]; Strand: w
  - AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon3 (CDS)
  - AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon3 (CDS)
Flanking Genome Sequence: 54-4215-1 - 3-prime edge
```
CTTTTAAGGC GGAATATCTA GTTAAACTCA TAATGAAGTT TAGTAAGCT
```

AT4G16860.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.
Computational Description: recognition of peronospora parasitica 4 (RPP4); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 24682 Blast hits to 14766 proteins in 601 species: Archae - 8; Bacteria - 1131; Metazoa - 1818; Fungi - 127; Plants - 20736; Viruses - 36; Other Eukaryotes - 826 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16890.1

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary: Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description: SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.2

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR