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54-4270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26519180 [Map]; Strand: w
      • AT5G66400.2 - [+] show detail - Dehydrin family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66400.1 - [+] show detail - Dehydrin family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66410.1 - [+] show detail - phosducin-like protein 3 homolog
        Distance: -590; Region: promoter
    Flanking Genome Sequence: 54-4270-1 - 5-prime edge
    CTCGTCAGTG GCCTGACCTC CTGGACGGTT CTGGTAAGAC GCCATGTTCT 
    TCTTGTCTTA AGCAAACACT TTGAGCTAAG CTAGTTAAAA AAACTCTTTC
    TTTGTGATAT TAGACTTTTG ATGAGTTTGA TCGATGAAGA TTCGTTAACG
    CATTGAAGAT AGTTTTATAG TCCGGTTTCG GATATGGATC AACTATTAGT
    TTAATGAATC AATATTTGGA AAGTGACGCG TGGCAGCAGC AGAAAATGTC
    GGCGTGGTGT TTCGCCATAC GTGTTCGTAT TTAAAACGAA CTTCTGATAT
    CACTAAAGGA ATCGGATTGA ATTTATTTTT GAGCTTTCAT GTCGATACCA
    AGTACGTGTT CATATCAATC CCATGACAGG GTGCTGGAAA GCAAAATATC
    TATCCTTTTC TTTGTGGCGG TACTAACATT ATCGTAGCTA ACAGGACACG
    TAATGCTCCT CCTCGAAAGC GATGCGTCGT GTTAATGATT TTCATACACA
    CGTACATCGT CGTTGATTGG GTGAATTTGA AGAAACTTGG CTGGGTCTGA
    AACATTTGGG CTCATGTGTG GGCCGTAAAT CACTTACTAA TTAGCCCATG
    GACTAAAACT AAGCCCTAAC AAAAATTTAC TCAACTTTTA CCAAACGCCC
    GCGTTTAGAT CGNTGGTGTT CATTGNTTTC AGTTGTCGGG GAGTTTTCTT
    CCTCTCTG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26519064 [Map]; Strand: w
      • AT5G66400.2 - [+] show detail - Dehydrin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66400.1 - [+] show detail - Dehydrin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66410.1 - [+] show detail - phosducin-like protein 3 homolog
        Distance: -706; Region: promoter
    Flanking Genome Sequence: 54-4270-1 - 3-prime edge
    CTGACGAGTA CGGAAACCCG ATCCAGCAGC AGTATGACGA GTACGGAAAT 
    CCGATGGGAG GAGGAGGATA CGGAACTGGT GGTGGTGGAG GAGCTACAGG
    TGGCCAAGGA TACGGAACAG GTGGCCAAGG GTACNGGATC AGGTGGCCAA
    GGGTACNGGA ACCGGTGGCC AAGGATACGG AACCGGGACC GGGACTGAAG
    GCTTTGGAAC TGGCGGAGGA GCTAGGCACC ACGGCCAAGA GCAACTCCAC
    AAGGAAAGTG GTGGTGGCTT GGGAGGAATG CTTCACCGCT CCGGATCTGG
    ATC

AT5G66400.1

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
Computational Description
RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66400.2

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
Computational Description
RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 55408 Blast hits to 21272 proteins in 1590 species: Archae - 46; Bacteria - 19188; Metazoa - 16568; Fungi - 3087; Plants - 7219; Viruses - 590; Other Eukaryotes - 8710 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66410.1

Model type
Protein coding
Short Description
phosducin-like protein 3 homolog
Curator Summary
Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.
Computational Description
phosducin-like protein 3 homolog (PLP3b); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: phosducin-like protein 3 homolog (TAIR:AT3G50960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR