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54-4279-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26501804 [Map]; Strand: c
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -698; Region: promoter
    Flanking Genome Sequence: 54-4279-1 - 5-prime edge 
    CATCCAACGG TCATTATTCA CTCCAAACCC ACTCTGCTTC TTCTTCTTCC 
    AAACATCTCT CAGCAGAGCT AACCATCTCT CTTTTGTAAT GGCTTCACTT 
    ATTTCCCTTG TTCTTCTTCT TTTGCTCACT TTATCTTCAG CAGAGTCCAA 
    GACTTTCTGG GGTGACGTGG CAGCTCTCAA AGACTTCAAG AACTCAGTGG 
    ATGCCAAATC CATGAGTCCA GGCTCTTGCC TGAGTTCTTG GGATTTCTCC 
    GTCGATCCCT GCGACAATAT ATTCAGCGAC ACATTCACTT GTGGGTTCCG 
    CTGCGACTCC GTCGTTACCG GATCGGGTCG GGTCACGGAG CTCAGTCTGG 
    ACCAAGCCGG TTACTCAGGC TCCCTCTCCT CCGTCTCTTT CAACCTTCCT 
    TATCTCCAGA CCCTCGATCT CTCCGGCAAC TACTTCTCCG GTCCACTTCC 
    CGACTCGCTC TCCAATCTCA CCCGTCTCAC CCGCCTCACT GTGTCCGGAA 
    ACTCCTTTTC CGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26501926 [Map]; Strand: c
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -576; Region: promoter
    Flanking Genome Sequence: 54-4279-1 - 3-prime edge 
    CGAGAGGGTC AAGGCGTGTG ATAGATCTAC TGAAAGTTGC TCTGAAACTT 
    GAAAGACAGA GGAATTTATA TATAGAGAGA TTGAGATATT AAAATAGATA 
    GTGTAAATTT ATATCATGTG TGTCATTGTC CATCAGACAT ATGCNGTGAA 
    GACAACAACA TCTGTACAGT GAGGTGTGGT TGGCCCTATC CCCATCCACC 
    ATAACTCAGA GGTTATGAGT TTGAGATTCT GTTGAGATTC CAAAGCAGAA 
    CAACTCTTGA TTTAGGATTA TTTGACATAT TACCAATTCA CATGTCATAA 
    ATTGACTAAT AAACTTTACA ATTTATTTCA TTTTCTCCCA TATGTGACGT 
    ACCCATTTGA CCAGAAGTTG TCAAAATCTA AACTAGTCTT GGTTGATGAC 
    ATAGATAGAA GAAGTAATTA TAGCCTTACA GGAAGCAAGG TTGATGGGTT 
    AATGAATGTG CAGCTGTTGC AAGCAAAGGT TCCAAATCAT TGGCTCTAAC 
    TAACTTTAAA TCTATGGAAG ACGACGAAAA TGTTCATATA TGATAGGATC 
    ACTCATTAGC GTTAGGTGTC TAAAACTCTA AACCTAAGCC ATGTGGGACA 
    CTAAATCATC CTAACGGGTC ACTAAGACTA TGCAGAGATT GGTAAAAACA 
    AAAGGTACTA ACATAATCTA TTGGCACCAT CTGAATTTGT TGTCGTCCTT 
    GCTTTTCGTC NGTATGTTGT TCT

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR