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Mutant Lines
54-4281-1

54-4281-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 9480554 [Map]; Strand: c
- AT5G26940.4 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: -19; Region: promoter
- AT5G26940.3 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: -148; Region: promoter
- AT5G26940.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: -186; Region: promoter
- AT5G26940.2 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: -213; Region: promoter

TTTAATAGAG AGAGGGAGAG AGCATAATTG AGATTGAAGT AAACAGGTCG 
CGTGAGAGGG AGAGTGGGAG AGAGAGAGAG ACCCGTTTTA TTCGGATCTG 
TGACCCGATC CGACAAATAC NGGATCTACN GTGGCTTGAA GTAAGAAGGG 
TCGACATGTT TCCACTTTTG GCAAATTTCA TCACCCTACT TTATAGTTTG 
GTACATTATG AAAAGTATTC GAGCACGATC TGATTTCGGT TGAAATGTTG 
CACTCCGAGA AGCATGATCA CCCAGATCAG TCCATACCCG ATTTCGTCTC 
GCAGTGATGA TCTACGTGAA GATCTTATTC AAGTTACTCT AAGACCATCT 
CCAACCAAGT CAATGTAAAG CCCAAACAGA AATACTCCAA TCTATTTAAA 
ATTCATTTGT GGCCTTTCCA CACAAAGTTA GGCCCAACTT ATTTCATTAA 
ATCTTAAATT ATTCATATTC AAAAGAGTGA CCCAAAATAG ATATAGAACG 
TCAACAAAGG AGAGGACAAA ACTGTGTTTT TTTAACTTTC TAGCGAGAGA 
TATTCTGTTT TTTGACTTAG GCCAAAACAG AGCTACAAGA CAATAACAAT 
AGACACAAAG CAGCTTGTTC TTCCTCCTTT AGACTCCTTC GTTTCTTCAC 
CGCCACGCCA CCGTGTGATG ATGATAATAG GTTTATCTTC TTGGAGGCTA 
AGCT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 9480670 [Map]; Strand: c
  - AT5G26940.4 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT5G26940.3 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Distance: -32; Region: promoter
  - AT5G26940.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Distance: -70; Region: promoter
  - AT5G26940.2 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Distance: -97; Region: promoter
Flanking Genome Sequence: 54-4281-1 - 3-prime edge
```
CTATTAAACA GTCGATTTCT TACAAAAATT CTCACTTCCG TGCAAGCAAA 
TGCAGTCTTG TTTCGAGTTT GATTCACACA AGGCAAGTAT CTTCTCCTCT 
CCGATTCATT TTCTCCTTCT GGGTCATTTC GATTCTCTGT AATTAAAGAC 
AAAGTTCGTC TCTTTTTAGG TCTCCTCGTT GAACGATTTG ATATAAAAAA 
TCTCAGATTT TGTTTGATTC CCTTCTTCAT TTCTGCAATT CCTCACTTGT 
TTTCGAATCA AAATCGAAAA ATTCGTTTCT TTACCCTTTT TGATTTGTTT 
GGATTAATGA CACAATTAGG TGAAAGTTAT GATTTTTATT GCTTCCTAGT 
TGTCTAAACG AAAGTAAAGA TTTGAAATTC AAAGCT
```

AT5G26940.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 3712 Blast hits to 3712 proteins in 1305 species: Archae - 2; Bacteria - 3079; Metazoa - 40; Fungi - 0; Plants - 53; Viruses - 4; Other Eukaryotes - 534 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G26940.2

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 3689 Blast hits to 3689 proteins in 1295 species: Archae - 2; Bacteria - 3056; Metazoa - 40; Fungi - 0; Plants - 53; Viruses - 4; Other Eukaryotes - 534 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G26940.3

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G26940.4

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR