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54-4281-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9480554 [Map]; Strand: c
      • AT5G26940.4 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -19; Region: promoter
      • AT5G26940.3 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -148; Region: promoter
      • AT5G26940.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -186; Region: promoter
      • AT5G26940.2 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -213; Region: promoter
    Flanking Genome Sequence: 54-4281-1 - 5-prime edge
    TTTAATAGAG AGAGGGAGAG AGCATAATTG AGATTGAAGT AAACAGGTCG 
    CGTGAGAGGG AGAGTGGGAG AGAGAGAGAG ACCCGTTTTA TTCGGATCTG
    TGACCCGATC CGACAAATAC NGGATCTACN GTGGCTTGAA GTAAGAAGGG
    TCGACATGTT TCCACTTTTG GCAAATTTCA TCACCCTACT TTATAGTTTG
    GTACATTATG AAAAGTATTC GAGCACGATC TGATTTCGGT TGAAATGTTG
    CACTCCGAGA AGCATGATCA CCCAGATCAG TCCATACCCG ATTTCGTCTC
    GCAGTGATGA TCTACGTGAA GATCTTATTC AAGTTACTCT AAGACCATCT
    CCAACCAAGT CAATGTAAAG CCCAAACAGA AATACTCCAA TCTATTTAAA
    ATTCATTTGT GGCCTTTCCA CACAAAGTTA GGCCCAACTT ATTTCATTAA
    ATCTTAAATT ATTCATATTC AAAAGAGTGA CCCAAAATAG ATATAGAACG
    TCAACAAAGG AGAGGACAAA ACTGTGTTTT TTTAACTTTC TAGCGAGAGA
    TATTCTGTTT TTTGACTTAG GCCAAAACAG AGCTACAAGA CAATAACAAT
    AGACACAAAG CAGCTTGTTC TTCCTCCTTT AGACTCCTTC GTTTCTTCAC
    CGCCACGCCA CCGTGTGATG ATGATAATAG GTTTATCTTC TTGGAGGCTA
    AGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9480670 [Map]; Strand: c
      • AT5G26940.4 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G26940.3 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -32; Region: promoter
      • AT5G26940.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -70; Region: promoter
      • AT5G26940.2 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -97; Region: promoter
    Flanking Genome Sequence: 54-4281-1 - 3-prime edge
    CTATTAAACA GTCGATTTCT TACAAAAATT CTCACTTCCG TGCAAGCAAA 
    TGCAGTCTTG TTTCGAGTTT GATTCACACA AGGCAAGTAT CTTCTCCTCT
    CCGATTCATT TTCTCCTTCT GGGTCATTTC GATTCTCTGT AATTAAAGAC
    AAAGTTCGTC TCTTTTTAGG TCTCCTCGTT GAACGATTTG ATATAAAAAA
    TCTCAGATTT TGTTTGATTC CCTTCTTCAT TTCTGCAATT CCTCACTTGT
    TTTCGAATCA AAATCGAAAA ATTCGTTTCT TTACCCTTTT TGATTTGTTT
    GGATTAATGA CACAATTAGG TGAAAGTTAT GATTTTTATT GCTTCCTAGT
    TGTCTAAACG AAAGTAAAGA TTTGAAATTC AAAGCT

AT5G26940.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 3712 Blast hits to 3712 proteins in 1305 species: Archae - 2; Bacteria - 3079; Metazoa - 40; Fungi - 0; Plants - 53; Viruses - 4; Other Eukaryotes - 534 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26940.2

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 3689 Blast hits to 3689 proteins in 1295 species: Archae - 2; Bacteria - 3056; Metazoa - 40; Fungi - 0; Plants - 53; Viruses - 4; Other Eukaryotes - 534 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26940.3

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26940.4

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR