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54-4283-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11044827 [Map]; Strand: c
      • AT4G20510.1 - [+] show detail - transposable element gene
        Distance: 28; Region: intergenic
      • AT4G20520.1 - [+] show detail - RNA binding;RNA-directed DNA polymerases
        Distance: -1085; Region: intergenic
    Flanking Genome Sequence: 54-4283-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG ACACGGTAGT AATGTGTACG TACACGGTAG 
    TAATGTGTAC GTACACGGTA GTAATGTATG TAGCAAAGGA AGGAATTTAA 
    AAGCAGAGTG GAGATGGTAG GTTGAGAAGC TCTCCGGCGC CGGAGATAAG 
    GTCGAAAACC CGATACAAAG GCTCCAACGT GACCACTATC AATCCGATAG 
    TCCACCACAG CTGACTGTTC GTCAAACGGA CTCAAGATCA AGAAGTTAGT 
    TTTGAAGACT TAAAGCAAGA CGAGGTCTCG GTTTTTGTGA AACATTTTAA 
    CATAATAGCA AGCGTTGAGC TCGGCTCAAT TTATAAGTGT GACTGCGAGC 
    GTTGAGCTCG GATTAACTGC AAGAATTACT TTTATCTTTT GAATGTAGCT 
    CGATACTAGG TGAACTAAGC TTCCNTNNGG NACTNAAAGC NACCNTNCCC 
    NTNTTGGCTT CNAGTCTNCN NNNANATAAA AACTANAACC GCCTCNAANA 
    TCTGNAAGCN TANNNNNGAT TATAGGCNNT AAANNNNGNG ACCTNGGNNN 
    ANNGCNANNN NNAANANNNA NNNGAACTNN GGNTANANNT TAANGCTNNN 
    ANNNNGNNNN NNANG

AT4G20510.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)
Link
InterPro Scan - TAIR

AT4G20520.1

Model type
Protein coding
Short Description
RNA binding;RNA-directed DNA polymerases
Computational Description
RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR