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54-4289-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26506756 [Map]; Strand: c
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -187; Region: promoter
    Flanking Genome Sequence: 54-4289-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCTGCCTCTT CCTTTGTTTG TCTGTTTGTG TTTGCCAAAA TGCTACTATA 
    ATTAAATCCT ACACTATTTG TTTATATGAT TTACGTTTAG ATATTAATCT 
    GTGTATTATT TGTTCGAACG ATATTTTAGT GAAATGAACG GAAGATTTCT 
    TTATTTATGA GAAATCTATA GTTATGTAAT ATCTAAACTA AAACTTTATA 
    ATCATATATC GTCCTACACA ACGTTGGGGA CTGGGTATAC TTGTATTTTT 
    AGATTCTTTA GTTAGATTCG ATGCAATTTT AATTATTATT AGCGAAATCT 
    TGCTTTGGTT GCGTAGTGTA TACCTGTGAC TTTAAAATTA AGTGCCTAAA 
    GTTCGCAGCT GGAAAACAGT TGCTTATCCA TGTTTCCAAG GAAGCAAATT 
    ACTACTCTGT TATTTTTATC ATTATATATA CAAACTTTAA TAATGAACAC 
    CTGATAGTAT TAAAATATTT AATTATGTAT ACAATACATA CACTGATGTA 
    TATCAATTGT CCCGTATACC TATACCCCAT GAATCTTAAT TTAATTGACC 
    AATTAATCAT TCCAAATTTT AACGAATTTC AGTTGTTTCA GAATATCAAA 
    CTACAGACAA AGTAAAAAAC TGAAGATAGT TCATGGATTT TTCCAAAAGG 
    ATATGGAGAG TTGACTAATA AGAAGAGGGG CACTATAGTC ATTTCCTAGT 
    GGAAATACCC ACTGTTGN

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR