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54-4290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1957858 [Map]; Strand: c
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-4290-1 - 5-prime edge 
    GTTACAAGCT CTCGAGGTAT TTCGATTTTC TCTCTTCTCG TTCATGTTTG 
    ATTGAATTTG AACTCAATTT TGAATCACGA GTATAATTTA GCTGAAAGAT 
    GATTTTGATT GAATTGGGTA TTTTGTTGAT GATCTTAGGT TTTTGATATG 
    TTGAGGGAAC AAACATTTTA TCAACCAAAG GAAGGAACTT ACATGAAGCT 
    GCTTGTTCTT CTCGGTAAAT CTGGTCAACC CAATCGTGCA CAGAAGCTGT 
    TCGACGAAAT GCTTGAAGAA GGACTTGAAC CAACTGTTGA ACTCTACACT 
    GCTCTTCTCG CTGCTTACAC TCGCAGCAAT CTCATCGACG ATGCTTTTTC 
    AATTCTTGAT AAAATGAAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1957974 [Map]; Strand: c
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -927; Region: promoter
    Flanking Genome Sequence: 54-4290-1 - 3-prime edge 
    CTTGTAACCA CTGCTTTTTG GCGATGAGAT CGGACAAAGT TTCAGTGACG 
    GTGTTAACCC ATCCGTTAGC TTTGCTTCTC CTGTCAAGTT TCTTCTTCAC 
    ATTCTTTATC GGAGTTCTTC TCTGATTAAC CGGCTCCGTG ATTCCGGGGA 
    ATT

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR