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54-4309-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2366103 [Map]; Strand: w
      • AT3G07390.1 - [+] show detail - auxin-responsive family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4309-1 - 5-prime edge 
    CCGGTGTACA TCCTTTCGGT CCTGATAATT TGGGCTCCCA CCGTGTGTTG 
    AGTTTCACAG AAGATGCAGC ACCGGGCTCT GCTCCTTCGC CGGGATCTGC 
    TCCTTCGCCG GGATCTGCTC CGGCGCCGGG CACCAGTGGC TCGACTACCC 
    CAGGAACAGC GGCGGGAGGT CCAGGGAACG CGGGGTCATT GACGAGGAAC 
    GTAAATTTTG GGGTCAATTT GGGAATTTTG GTTTTGTTGG GTTCTATTTT 
    TATTTTCTGA ATGGGGATCT CTCTCTAGCC TCTCTTCTCT TCTTGAGTCT 
    CTCTCTATTT TTTTTTTTTT NGGGNNGGNC NAAAAAAAAN GGGNCCCCNA 
    NCNTTTNGNC NNGTTNAANN TTANGGNCCN TTNNTTTTTT TCCCCCNNTT 
    TNTTAAAANT TTTGGGTTNG NNGGNCCCTT TNNTTTNNNN AAANGNAAAN 
    NNTTTTTTTT TTTAAAAANN TTTTTTNCCC CCCCCNGGNC CTTTTTNANT 
    AAANNAAANA AGCCNNNNNN TTTTNAAAAA AAAAAANNTT TTNTTNGNNA 
    NCCCANCCCC CCCAAAAATT TTTTTTTNNC CCCGNTTTNN TTNTAANGNA 
    AANANNAANG GGTTNGNTTT TGNNAATTNT TTNAAANAAA AATTNNNGAA 
    NTNTNNTTGA ANAGGGGCAA ATTAAAACTT TTNACNTGGG AAANTTTNNG 
    GAAAN

AT3G07390.1

Model type
Protein coding
Short Description
auxin-responsive family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational Description
Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR