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54-4314-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7621845 [Map]; Strand: c
      • AT2G17520.1 - [+] show detail - Endoribonuclease/protein kinase IRE1-like
        Distance: 736; Region: intergenic
      • AT2G17525.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -1981; Region: intergenic
    Flanking Genome Sequence: 54-4314-1 - 5-prime edge 
    CTTGACAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCGG TAATTGAGGC GTCATAATTT TGTCAAATAA 
    GATATCCATT ATGCCCTCTC AGTTAGTTGG TTAAGTTTTA ACGTTGGTCA 
    GTCGATTAAT AATCCAATTT AGACAGTTTT TTATTTATAG TTATAAATTA 
    TAGAGGTCGG AAAAGAAATT TTTAAAATCA AGATAAAAAA GGTTATACAA 
    AAATGGATGC GAGTCTATAG CATATACGAG AAATGTTAGA TATGAAGCAA 
    CCAAAGTGAT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7622106 [Map]; Strand: w
      • AT2G17520.1 - [+] show detail - Endoribonuclease/protein kinase IRE1-like
        Distance: 997; Region: intergenic
      • AT2G17525.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -1720; Region: intergenic
    Flanking Genome Sequence: 54-4314-1 - 3-prime edge 
    ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATT 
    ATTGAGTTAC ATTTACAACA ACAGTTTTTT TTGGAGGAGT ATCGTGAATA 
    AGAGTTCAAG TCCACTCGAT CCTCACTTTA GAAGAAATTC TAAAATTCTT 
    ATATTTGCTA TTATTACTCT TCCTAGAAAA CACCTAAACA ATATTTAAAA 
    ATTTAGATGC AGCCATAATT TCCGCGATCA ACTTTGGCAT CGTTGTAATA 
    TGAGAAACAC AAATGTTGAG GGGGTTAATC GTTTGGTTCC CATCATGACG 
    CCACTATAAG GGGGTAAAAC ACCCCATAAA AAAAAACCTA TTTACAGAAA 
    CACACTAAAA ACCATTCNTA TTCACCAAAC CAAAACCAAT CANATN

AT2G17520.1

Model type
Protein coding
Short Description
Endoribonuclease/protein kinase IRE1-like
Curator Summary
Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.
Computational Description
IRE1A; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), KEN domain, ribonuclease activator (InterPro:IPR010513), PUG domain (InterPro:IPR006567), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: inositol requiring 1-1 (TAIR:AT5G24360.1); Has 104790 Blast hits to 103944 proteins in 4127 species: Archae - 110; Bacteria - 12550; Metazoa - 37627; Fungi - 10369; Plants - 27162; Viruses - 328; Other Eukaryotes - 16644 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G17525.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR