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54-4315-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 198876 [Map]; Strand: w
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 297; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -3540; Region: intergenic
    Flanking Genome Sequence: 54-4315-1 - 5-prime edge 
    AAATNTTGAA CCCNCANNCA AAATCGGTTA TACGATAACG GTCGGTACGG 
    GATTTTCCCA TCCTACTTTC ATCCCGTCAC ACAATGGATA GTACACCTGA 
    TAAAGATGGA TTTTAAGAAA TTAACAAACT GAATGAATTA TATACAAACT 
    AATAAATAAT AAAGGTTTTA TTCTTTTTAA TATAAATATA CATATTTTAA 
    TAGTTAGTAA AACTATTTCA TTTTTGTTTT TGTAAAAATT ATGTATAACA 
    CTATATATAA TATGTATAAT GCAACAATCA ACATGTCACT TATATGTTCT 
    TGTTTTAGTA TATTATCCTT TGGTTACATT ATTATGTGAT ATACAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 198750 [Map]; Strand: w
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 171; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -3666; Region: intergenic
    Flanking Genome Sequence: 54-4315-1 - 3-prime edge 
    CTTTTAANGG GNACNGAGGT ATTTTNTNGA CCGTTACCGA CCGTTTTCAT 
    CCCNTGATTG TGTCCACATA ACCATATCCC ATCAAAGAAA ATGTTATTCA 
    CTAAGTACGA CATANAGTGC AACAACTACA AAAACATTAT CCAGAACTTT 
    ATATACATAT ATATGATCCA TAAAATTTAT TTCTCCTTTG AGTAAAAATC 
    TCTACAAATT TAGTAATCAA CTCACCCAAT CTTATATCTT TATGTTTTCA 
    TAAAATAAAA AAACATTTTG AAATTGTCAT ACTCCTAATC CATAATACAT 
    TGTTATGTCA AACTCTGAAA ATGTTACACA AAACGACTTC AAACAAACAC 
    TATCACATCC CTCCATCTTC ACACAAACAC ACTAAAATAA AATAATAAAT 
    CATATACTAT ATAATATCCT GTAGGAAGAA GACTGTCTTT GAAAGTGATT 
    CTCTGATGAC CCCACCACTA ACAGTTTCTG GTCTGGTCTT TGAAAGGATC 
    TGATTTCCTC CTTCTCCCTC TCAGTAGTTT CTGATCAGAC AGGAGCTCTG 
    TGAGGTTATT ATCTGAGTGA GTAATACAAA CTATCTACAT GGTTCTATGC 
    TAAAAATAAT TAGCAATGGT GACAGTGAGG CTATGTTCAG AGCTTGCAGC 
    TGTCTCAACA ATGGCTTTGT CTTTAAGAAA AAGAGTTTTC AGCTTTCAAG 
    ACCTTTCTAG AATAAGGATG CTCCCATCCG TCTTCAACTC AGGTGAAACC 
    AGAGAGTGCT CANAGTTGTT GANANAGTAA

AT4G00440.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00450.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
Computational Description
CENTER CITY (CCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: photoperiodism, flowering, regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med12 (InterPro:IPR019035); Has 216 Blast hits to 184 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 65; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR