1. Home
  2. Mutant Lines
  3. 54-4321-1

54-4321-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 689949 [Map]; Strand: c
      • AT4G01590.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT4G01590.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis prot...
        Distance: 0; Region: intron1 (CDS)
      • AT4G01590.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis prot...
        Distance: 0; Region: intron1 (CDS)
      • AT4G01593.1 - [+] show detail - other RNA
        Distance: -761; Region: promoter
      • AT4G01593.2 - [+] show detail - other RNA
        Distance: -924; Region: promoter
    Flanking Genome Sequence: 54-4321-1 - 5-prime edge 
    CTTATCACTT AGGCGATGGT GGTGTTTCTA AGAAAGGTAT CAACTTTATA 
    TTTCTGTCTT TGTAATCTCT GCTTAAAGCT AAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19834927 [Map]; Strand: w
      • AT5G48910.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G48920.1 - [+] show detail - tracheary element differentiation-related 7
        Distance: -410; Region: promoter
    Flanking Genome Sequence: 54-4321-1 - 3-prime edge 
    CTTTTAGGGG NACTAAACGC TTGGTTTTCG TCGGGCATAG CCCNTCGTNG 
    GATNCTTGCG TNGATTNTCN NCGAACCCAA CANAGACACT TNNNTNTCCC 
    GGCGGTAACC TCNCCGGCGT CTTCTCCGGC GAGTCATNCA TCTGNACTCT 
    TTCCTCANAT GCATCNCCCT GTCNGAACTA TNNATAGACC TCGTCTCANN 
    TCCNNGCCGT TTTCATTANN TCTGGNCAAA TGCGATTACN CTCTCGNCGC 
    NGGAGAGATT CTANCGATTN TGTGCTACCT CCNATCTCCA CCACCGTGNC 
    CTTGNCTACG CACATATNAT CACNAGGACC GGGCCGTCNA CCATGNCTGG 
    NCNANNNTTN NNCTGTGGAC GCANATATAA ANTAAAAAGT ANATNATNTT 
    GANCTTNCGG GGNGGTANTT TNTTNNGAGG AGGGNGGGGG AANGCCNTCN 
    NTTTTTTNGA NTNNGANCAG AAAAANAGNN TTCTTAAANN AAAAANAATN 
    TCCCNCTCNN GNANCCCNCC TATCCCCGGA TTANGNTAAA NATTNNANAT 
    TTTNTTNCCN GGCCGCGGGG GANAAAAAAA AACCCGNCCG CGGGGATTTC 
    NNCTNCTATC TTTTTTTTAA NNNANNAAAN ANGGNNNNGG NCNTTNTNTT 
    NCCNGGGCNA GNNNANANGG GGGGGGGGCN NGNTATTTTT TTTNGTGTCA 
    NCTTNNNNTN TTTTTCGGAG ANNNGNGNTG NGTANATGTA CCCCNTNNTN 
    TNTTNNTTNN NTNTNTNTGG CCGGGAAAAA AACACCTTGN NCNTCTGGNG 
    TNGAAAAANA NGNATNANAN AGNTNNAAAA AAAAANNAAA AAAN

AT4G01590.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01590.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01590.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1).
Link
InterPro Scan - TAIR

AT4G01593.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G01595
Link
InterPro Scan - TAIR

AT4G01593.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G01595
Link
InterPro Scan - TAIR

AT5G48910.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype.
Computational Description
LOW PSII ACCUMULATION 66 (LPA66); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G48920.1

Model type
Protein coding
Short Description
tracheary element differentiation-related 7
Computational Description
tracheary element differentiation-related 7 (TED7); BEST Arabidopsis thaliana protein match is: tracheary element differentiation-related 6 (TAIR:AT1G43790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR