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54-4330-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 168586 [Map]; Strand: c
      • AT2G01360.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: 107; Region: intergenic
      • AT2G01370.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: 45; Region: intergenic
    Flanking Genome Sequence: 54-4330-1 - 5-prime edge 
    CCGCTANTCT ATNACAAATG NCAATAGAAG TGAAGAAATT AAANTNANNA 
    TANNAGTAAA AAATGATGAG TANTGGGCTT NANAACAGTA TAGGCCTCAT 
    ATTTANTGGG CCTAGATTAA ACATGTACAT GTTGACTTTC ACCTGCAACC 
    AGATTACAAC AGATTTGTNN CAAACAGGAA GATCACATAT TTTGTCTTCA 
    ACATGAACAA TTTCCCGGAA ACGTGTAGAA GCAACAAGAC TCTTTTTCTC 
    CTTCCTCAAT GACGATGTTT CTCTCTGGAA ATCACTGGTT TTCTCAAGAC 
    CAGACAATAG AACATTGTAT GTCCCCAGCG AAGGCATTAT CTCTCGCTCT 
    CTCATCTCTC CTAATATCTT CATTGCTTTC TCTGGACTCC CTGCTGAGAT 
    ATAAACATCC AGCAGCGCAG TATAAGCAGC TAAACCCTTT TGATCATCCG 
    GAAGTAAGTC GAAAACCTCT GCAGCTAAAC GAGGTCTTCT CCCAAACCCG 
    AGCCTGTGGA TCAACATTGC TCCTTGGTAA CAACCAAGCG AGTGTTGGGC 
    TTTCAGCAGC TCCTTGACCA CTTCAATCAC TTTAGGAAGC TCGTTTGATC 
    TCAGAAAATT ACCAATTAAC GCGAGATACG CTGACTTCTC GAGATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174334 [Map]; Strand: c
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4330-1 - 3-prime edge 
    ATTAGCGGTT GCTACTGACG CCGGAGAAGA GAGATGGCGA GATCGTGCTC 
    TATCTGGACA CCTGTTTTGA TCTCACTTTC ACCTGTGACC GGAGAATCAC 
    CTAAAATTTC ACAGGCGCCG GGTGATTTTA GCCACAAGTA TAGGATCTCC 
    TCAGGTTCGT ACAAGTACAA CAGCTTTCGA AGATCCATAT AGTTAGTTTT 
    CTTTTCGTGG AGAAATATGT TGTGCTATGT GTGTCAATGA ATT

AT2G01360.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G01390.1); Has 425 Blast hits to 414 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01370.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT1G55950.1); Has 264 Blast hits to 262 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR